; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G033760 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G033760
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTranscription factor IIIB 60 kDa subunit
Genome locationchrH02:7840134..7840349
RNA-Seq ExpressionChy2G033760
SyntenyChy2G033760
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0070897 - transcription preinitiation complex assembly (biological process)
GO:0000126 - transcription factor TFIIIB complex (cellular component)
GO:0000995 - RNA polymerase III general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10203.1 transcription factor IIIB 60 kDa subunit [Cucumis melo var. makuwa]6.70e-3090.28Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTT-KEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPS KKKCEEQAEET+K RNTT KEFETTEEQ++DYDDGY GTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTT-KEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

XP_008450711.1 PREDICTED: transcription factor IIIB 60 kDa subunit [Cucumis melo]5.79e-3090.28Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTT-KEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPS KKKCEEQAEET+K RNTT KEFETTEEQ++DYDDGY GTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTT-KEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

XP_011659916.1 transcription factor IIIB 60 kDa subunit isoform X1 [Cucumis sativus]1.27e-36100Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

XP_011659918.1 transcription factor IIIB 60 kDa subunit isoform X2 [Cucumis sativus]1.24e-36100Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

XP_038880116.1 transcription factor IIIB 90 kDa subunit-like isoform X4 [Benincasa hispida]1.77e-2078.87Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AG EPS KKK EEQAEET+K +NTTKEFE TE+Q++D DDG DGTY SGLYYENMEE YN+EQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

TrEMBL top hitse value%identityAlignment
A0A0A0LZ47 Uncharacterized protein9.9e-30100Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

A0A1S3BQV3 transcription factor IIIB 60 kDa subunit2.8e-2490.28Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRN-TTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPS KKKCEEQAEET+K RN TTKEFETTEEQ++DYDDGY GTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRN-TTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

A0A5D3CEB6 Transcription factor IIIB 60 kDa subunit2.8e-2490.28Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRN-TTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AGMEPS KKKCEEQAEET+K RN TTKEFETTEEQ++DYDDGY GTYGSGLYYENMEETYNHEQDYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRN-TTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

A0A6J1HAL7 transcription factor IIIB 60 kDa subunit-like2.2e-1367.53Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTE------EQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AG E SAKKK  E+A ET+KT++ TKEFE+TE      EQE DYD   DGTYGSGLYYENMEE Y++E DYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTE------EQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

A0A6J1HVK9 transcription factor IIIB 60 kDa subunit-like9.9e-1468.83Show/hide
Query:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTE------EQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD
        AG E SAKKK  EQA ET+KT++ TKEFE+TE      EQE DYD   DGTYGSGLYYENMEE Y++E DYGYDEYD
Subjt:  AGMEPSAKKKCEEQAEETEKTRNTTKEFETTE------EQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTGGTATGGAGCCTTCGGCGAAAAAGAAATGTGAAGAACAGGCTGAAGAGACCGAAAAGACGCGAAATACAACTAAAGAATTTGAAACCACAGAGGAGCAGGAAGAGGA
TTATGATGATGGTTATGATGGAACATATGGTTCTGGTCTCTATTACGAGAATATGGAAGAAACATACAACCATGAACAAGATTATGGCTATGATGAATATGATTGA
mRNA sequenceShow/hide mRNA sequence
GCTGGTATGGAGCCTTCGGCGAAAAAGAAATGTGAAGAACAGGCTGAAGAGACCGAAAAGACGCGAAATACAACTAAAGAATTTGAAACCACAGAGGAGCAGGAAGAGGA
TTATGATGATGGTTATGATGGAACATATGGTTCTGGTCTCTATTACGAGAATATGGAAGAAACATACAACCATGAACAAGATTATGGCTATGATGAATATGATTGA
Protein sequenceShow/hide protein sequence
AGMEPSAKKKCEEQAEETEKTRNTTKEFETTEEQEEDYDDGYDGTYGSGLYYENMEETYNHEQDYGYDEYD