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Chy2G034460 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G034460
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionAP complex subunit sigma
Genome locationchrH02:8462741..8465433
RNA-Seq ExpressionChy2G034460
SyntenyChy2G034460
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7847725.1 hypothetical protein BT93_L2687 [Corymbia citriodora subsp. variegata]4.51e-8997.79Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNIL+PIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_004135683.1 AP-4 complex subunit sigma [Cucumis sativus]1.15e-91100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_015899491.1 AP-4 complex subunit sigma [Ziziphus jujuba]6.41e-8997.06Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDN+ENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNIL+PIQLM+KSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_022144808.1 AP-4 complex subunit sigma [Momordica charantia]1.91e-9099.26Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_023908431.1 AP-4 complex subunit sigma [Quercus suber]2.24e-8997.79Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSK+NIL PIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

TrEMBL top hitse value%identityAlignment
A0A0A0M1T6 AP complex subunit sigma1.4e-69100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A1S3BQ09 AP complex subunit sigma1.4e-69100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A5D3CFV6 AP complex subunit sigma1.4e-69100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A6J1HBI1 AP complex subunit sigma1.4e-69100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A6J1JK41 AP complex subunit sigma1.4e-69100Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

SwissProt top hitse value%identityAlignment
O82201 AP-4 complex subunit sigma5.7e-6894.07Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVYRRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS
        LEKAHFMLEEMVMNGCIVETSK+NILSPIQLM+K+
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS

Q3ZBB6 AP-4 complex subunit sigma-11.2e-4154.41Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Q54NZ4 AP-4 complex subunit sigma9.6e-3960.45Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        +VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++YR+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        L+KAHF+L+EMV NG IVE SK +IL  + L+ K
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

Q9WVL1 AP-4 complex subunit sigma-17.8e-4154.41Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Q9Y587 AP-4 complex subunit sigma-17.1e-4254.41Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein6.0e-2846.97Show/hide
Query:  NKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLE
        N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRRYA LFF V VD  +NELA LE IHL VE +D  F NVCELD++F+  
Subjt:  NKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLE

Query:  KAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        K + +L+E ++ G + ETSK  I+  +  +EK
Subjt:  KAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT2G17380.1 associated protein 196.6e-2741.04Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        +V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+RYASL+F + +D  +NEL +LE IH  VE +DR+FG+VCELD++F+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
          KA+++L+E+++ G + E+SK  +   I   ++
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT2G19790.1 SNARE-like superfamily protein4.1e-6994.07Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        MVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVYRRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFH
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS
        LEKAHFMLEEMVMNGCIVETSK+NILSPIQLM+K+
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS

AT3G50860.1 Clathrin adaptor complex small chain family protein2.6e-2338.13Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNY-----KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCEL
        M+N QG+ RLA++Y+ L +E+++ L   +     +R E   +F+E  +      ++VY+ YA+L+F++  D  ENELA+L+ I +LVET+D+ F NVCEL
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNY-----KIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCEL

Query:  DIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        DI+F+  K H +L+E+V  G ++ETS + ++  ++ + K
Subjt:  DIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT4G35410.2 Clathrin adaptor complex small chain family protein6.6e-2741.04Show/hide
Query:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH
        +V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+RYASL+F + +D ++NEL +LE IH  VE +DR+FG+VCELD++F+
Subjt:  MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH

Query:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
          KA+++L+E+++ G + E+SK  +   I   ++
Subjt:  LEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTTGAAGAACGTCGAGCTCTTGAGGGTGAAATTGTTCGAAAATGTCTCGCTCGTAA
CGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTGGTTGGAGTTGACAACGATGAAAATGAACTGGCAA
TTTTGGAATTCATTCACCTTTTGGTTGAGACCATGGACCGTCATTTTGGGAATGTGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAG
ATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATTCAACTGATGGAGAAATCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTTGAAGAACGTCGAGCTCTTGAGGGTGAAATTGTTCGAAAATGTCTCGCTCGTAA
CGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTGGTTGGAGTTGACAACGATGAAAATGAACTGGCAA
TTTTGGAATTCATTCACCTTTTGGTTGAGACCATGGACCGTCATTTTGGGAATGTGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAG
ATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATTCAACTGATGGAGAAATCATCATGA
Protein sequenceShow/hide protein sequence
MVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEE
MVMNGCIVETSKSNILSPIQLMEKSS