; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G035040 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G035040
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description30S ribosomal protein S16
Genome locationchrH02:9007072..9009052
RNA-Seq ExpressionChy2G035040
SyntenyChy2G035040
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008337717.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Malus domestica]1.72e-5968.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLP             +        N   +      +YWLSVGAQPSDPVQRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDP+SGRFVTPEK    G  G+
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

XP_008344026.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like isoform X2 [Malus domestica]1.72e-5968.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLP             +        N   +      +YWLSVGAQPSDPVQRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDP+SGRFVTPEK    G  G+
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

XP_008450874.1 PREDICTED: 30S ribosomal protein S16 [Cucumis melo]1.79e-6574.65Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLP             +        N   +      +YWLSVGAQPSDP+QRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTD SNGE
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

XP_011659994.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus]1.46e-6876.55Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLP             +        N   +      +YWLSVGAQPSDPVQRILFRSGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGEADS
        LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTDGSNGEADS
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGEADS

XP_038880698.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa hispida]4.70e-7077.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVF-RTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSG
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLP      G      +   L F R NHS++TLSHPSRYWLSVGAQPSDPVQRILFR+G
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVF-RTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSG

Query:  LLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTD---GSNGEADS
        +LPPPPMVAM RKGGPRDTR VDPLSGRFVTPEK PTD   G +G+ADS
Subjt:  LLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTD---GSNGEADS

TrEMBL top hitse value%identityAlignment
A0A0A0LZG2 Uncharacterized protein1.7e-5276.55Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLP             +        N   +      +YWLSVGAQPSDPVQRILFRSGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGEADS
        LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTDGSNGEADS
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGEADS

A0A1S3BQ70 30S ribosomal protein S163.5e-5074.65Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLP             +        N   +      +YWLSVGAQPSDP+QRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTD SNGE
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

A0A498KI51 Uncharacterized protein1.2e-4568.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLP             +        N   +      +YWLSVGAQPSDPVQRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDP+SGRFVTPEK    G  G+
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

A0A5D3CDW9 30S ribosomal protein S163.5e-5074.65Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLP             +        N   +      +YWLSVGAQPSDP+QRILFR+GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTD SNGE
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial2.0e-4568.92Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLP             +        N   +      +YWLSVGAQPS+PVQRILFR+G+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGS---NGEADS
        LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPE KPTD S   +G ADS
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGS---NGEADS

SwissProt top hitse value%identityAlignment
B5YFD8 30S ribosomal protein S161.7e-1445Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSGL
        +V+IRL+R G KNKP YR++A DSR PRDGKHLEILG+Y+P                      +T+ + I L      YWLS GAQP+D V  IL + G+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSGL

B8E2G7 30S ribosomal protein S167.9e-1546Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSGL
        +V+IRL+R G KNKP YR++A DSR PRDGKHLEILG+Y+P                      +T+ + I L      YWLS GAQP+D V  IL R G+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSGL

O65686 30S ribosomal protein S16-1, chloroplastic1.6e-2342.75Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSG
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL                     + +   ++L     +YWLSVGAQP+D V+ +LFR+G
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSG

Query:  LLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV
        L+PP PMV +G K G + T + V P++G  +
Subjt:  LLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV

Q8R9X1 30S ribosomal protein S161.7e-1440.78Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPL--PAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRS
        M VRIRL RFG K +PFYR++ ADSRSPRDG+ ++ +GYYNP+  PA                        +      ++ WLSVGAQPSD V+ +  + 
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPL--PAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRS

Query:  GLL
        G++
Subjt:  GLL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial1.1e-4362.68Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLP      G   +  + + +               +YWLSVGAQPSDPVQR+LFRSGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  + ++ +
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 161.1e-2442.75Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSG
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL                     + +   ++L     +YWLSVGAQP+D V+ +LFR+G
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPS-RYWLSVGAQPSDPVQRILFRSG

Query:  LLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV
        L+PP PMV +G K G + T + V P++G  +
Subjt:  LLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV

AT5G56940.1 Ribosomal protein S16 family protein7.5e-4562.68Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLP      G   +  + + +               +YWLSVGAQPSDPVQR+LFRSGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL

Query:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE
        LPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  + ++ +
Subjt:  LPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGE

ATCG00050.1 ribosomal protein S161.7e-0428.28Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+                      TN + + LS    + L  GAQP+     I  ++G+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGCGACGGCAAACATCTTGAG
ATTCTAGGTTACTATAATCCTTTACCAGCTGTGATGTTTTACTATGGTAGTATTCATCTAACTCATAGGCACAATAACCTTGTCTTTCGTACTAATCATTCACTC
ATCACCCTTTCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCGTGCAGCGGATTCTTTTTAGATCAGGGTTACTTCCACCACCCCCA
ATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTTGTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAAT
GGTGAAGCCGATTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGCGACGGCAAACATCTTGAG
ATTCTAGGTTACTATAATCCTTTACCAGCTGTGATGTTTTACTATGGTAGTATTCATCTAACTCATAGGCACAATAACCTTGTCTTTCGTACTAATCATTCACTC
ATCACCCTTTCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCGTGCAGCGGATTCTTTTTAGATCAGGGTTACTTCCACCACCCCCA
ATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTTGTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAAT
GGTGAAGCCGATTCATAG
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPAVMFYYGSIHLTHRHNNLVFRTNHSLITLSHPSRYWLSVGAQPSDPVQRILFRSGLLPPPP
MVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDGSNGEADS