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Chy2G036670 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G036670
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionIntegrase, catalytic core
Genome locationchrH02:10879917..10880278
RNA-Seq ExpressionChy2G036670
SyntenyChy2G036670
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]1.79e-1774.03Show/hide
Query:  MINQRGRA-LAPEEQEAGET-------TSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVEP-TLQNWGRRG
        MINQRGRA  A E QEAGET       +SR LRSVEASIEEIR+LLN VV RLDEENA+ NDR+VEP TLQNWGRRG
Subjt:  MINQRGRA-LAPEEQEAGET-------TSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVEP-TLQNWGRRG
TYJ95781.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.89e-1362.65Show/hide
Query:  MINQRGRALAPEEQ-EAGET-------TSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVEP-TLQNWGRRGQTQSKE
        M N RGRA A EEQ EAGET       +SRRLRSVEAS+EEI++LLN++VQRL+EEN ++NDRE+EP TLQ+ GRR Q + +E
Subjt:  MINQRGRALAPEEQ-EAGET-------TSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVEP-TLQNWGRRGQTQSKE
TrEMBL top hitse value%identityAlignment
A0A5D3BAY9 Integrase, catalytic core3.5e-1161.45Show/hide
Query:  MINQRGRALA-PEEQEAGE-------TTSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVE-PTLQNWGRRGQTQSKE
        M N RGRA A  E+QEAGE       T+SRRLRSVEAS+EEI++LLN++VQRL+EEN ++NDRE+E PTLQ+ GRR Q + +E
Subjt:  MINQRGRALA-PEEQEAGE-------TTSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVE-PTLQNWGRRGQTQSKE
A0A5D3DGR0 Reverse transcriptase1.2e-1473.08Show/hide
Query:  MINQRGRA-LAPEEQEAGE-------TTSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVE-PTLQNWGRRGQ
        MINQRGRA  A E QEAGE       T+SR LRSVEASIEEIR+LLN VV RLDEENA+ NDR+VE PTLQNWGRRG+
Subjt:  MINQRGRA-LAPEEQEAGE-------TTSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVE-PTLQNWGRRGQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAACCAGCGTGGCAGAGCTCTGGCACCTGAAGAACAAGAGGCGGGAGAAACCACCTCAAGACGCTTGCGGTCAGTGGAAGCTTCCATCGAAGAAATCCGGCGACT
ATTGAACGACGTTGTACAACGATTAGATGAAGAAAATGCGCGGCAAAATGATAGAGAAGTAGAACCGACATTACAAAATTGGGGAAGAAGAGGGCAGACACAATCGAAGG
AACGAGTGGCGAGCGCACGAAGAAGAAATTCAAAACTCCTCTTCTCCAGAAGAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAACCAGCGTGGCAGAGCTCTGGCACCTGAAGAACAAGAGGCGGGAGAAACCACCTCAAGACGCTTGCGGTCAGTGGAAGCTTCCATCGAAGAAATCCGGCGACT
ATTGAACGACGTTGTACAACGATTAGATGAAGAAAATGCGCGGCAAAATGATAGAGAAGTAGAACCGACATTACAAAATTGGGGAAGAAGAGGGCAGACACAATCGAAGG
AACGAGTGGCGAGCGCACGAAGAAGAAATTCAAAACTCCTCTTCTCCAGAAGAAAGTGA
Protein sequenceShow/hide protein sequence
MINQRGRALAPEEQEAGETTSRRLRSVEASIEEIRRLLNDVVQRLDEENARQNDREVEPTLQNWGRRGQTQSKERVASARRRNSKLLFSRRK