; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G037270 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G037270
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchrH02:11739074..11742624
RNA-Seq ExpressionChy2G037270
SyntenyChy2G037270
Gene Ontology termsNA
InterPro domainsIPR028919 - Viral movement protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051217.1 polyprotein [Cucumis melo var. makuwa]2.84e-3851.72Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLFST-ISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        +N+G++QIGVKTLT KI SNASIILC+ D R    EDS+L LVE+ L DGP +FN+FPN+ +SLF   +   L +  +V+G +Q+P+ ++PI +  RTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLFST-ISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV
        KL  + F + ALIESP GKTVFFQT+   +     VQKV+ W++V
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV

KAG6590198.1 hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sororia]6.18e-7972.94Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF--STISNVLSVHFLVKGLDQIPKESAPIVVTCRTC
        MNIGLVQIGVKT+T+KIPSNASIILC+RDNRI+K+EDS++A+VES L DGPFYFNVFPN+N SLF  S I NVLSVH LVKG DQ+ K S PIVV+CRTC
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF--STISNVLSVHFLVKGLDQIPKESAPIVVTCRTC

Query:  YKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDD------DVVQKVTMWNQVQLPSDWPPQLHIPTVPRL
        YKLNQ  FG EAL+ESPVGKTVFFQT+I G  +       DVVQKVT W+QVQLPS+WPPQLHIP  P +
Subjt:  YKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDD------DVVQKVTMWNQVQLPSDWPPQLHIPTVPRL

KGN66493.1 hypothetical protein Csa_007053 [Cucumis sativus]2.67e-10290.12Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        MNIGLVQIGVKTLTKKIP NASIILCLRDNRI+KLEDSLLALVES L DGPFYFNVFPN+NLSLF S+I+NVLSVH LVKGLD+IPK SAPIVVTCRTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQ
        KLNQN+FGSEALIESPVGKTVFFQ EIF D DDDVVQKVTMWNQVQLPSDWPP+LHIPTVPRLVFGSSK AQ
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQ

TYK18870.1 hypothetical protein E5676_scaffold204G00720 [Cucumis melo var. makuwa]3.33e-3988.16Show/hide
Query:  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQQ
        TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGD   DVVQKVTMW+QVQLPSDWPPQL IPT P+LVFGSSK AQ+
Subjt:  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQQ

TYK18873.1 polyprotein [Cucumis melo var. makuwa]1.76e-3952.41Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLFST-ISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        +N+G++QIGVKTLT KIPSNASIILC+ D R    EDS+L LVE+ L DGP +FN+FPN+ +SLF   +   L +  +V+G +Q+P+ ++PI +  RTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLFST-ISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV
        KL  + F + ALIESP GKTVFFQT+   +     VQKV+ W++V
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV

TrEMBL top hitse value%identityAlignment
A0A0A0LXM3 Uncharacterized protein4.3e-8090.12Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSL-FSTISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        MNIGLVQIGVKTLTKKIP NASIILCLRDNRI+KLEDSLLALVES L DGPFYFNVFPN+NLSL FS+I+NVLSVH LVKGLD+IPK SAPIVVTCRTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSL-FSTISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQ
        KLNQN+FGSEALIESPVGKTVFFQ EIF D DDDVVQKVTMWNQVQLPSDWPP+LHIPTVPRLVFGSSK AQ
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQ

A0A0A0LZS0 Uncharacterized protein7.6e-2950.34Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        +N+G++QIGVKTLT KIPSNASIILC+ D R    EDS+L LVES L DGP +FN+FPN+ + +F   +     +  +V+G +Q+P+ ++PI +  RTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV
        KL  +   + ALIESP GKTVFFQT        D  QKV+ W++V
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV

A0A5A7U9X3 Polyprotein2.4e-3051.72Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        +N+G++QIGVKTLT KI SNASIILC+ D R    EDS+L LVE+ L DGP +FN+FPN+ +SLF   +   L +  +V+G +Q+P+ ++PI +  RTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV
        KL  + F + ALIESP GKTVFFQT+   +     VQKV+ W++V
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV

A0A5D3D5S0 Uncharacterized protein1.1e-3088.16Show/hide
Query:  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQQ
        TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGD   DVVQKVTMW+QVQLPSDWPPQL IPT P+LVFGSSK AQ+
Subjt:  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQQ

A0A5D3D5V1 Polyprotein2.8e-3152.41Show/hide
Query:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY
        +N+G++QIGVKTLT KIPSNASIILC+ D R    EDS+L LVE+ L DGP +FN+FPN+ +SLF   +   L +  +V+G +Q+P+ ++PI +  RTCY
Subjt:  MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLF-STISNVLSVHFLVKGLDQIPKESAPIVVTCRTCY

Query:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV
        KL  + F + ALIESP GKTVFFQT+   +     VQKV+ W++V
Subjt:  KLNQNNFGSEALIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATAGGCCTGGTTCAAATTGGTGTCAAAACCCTAACCAAAAAAATCCCTTCAAATGCTTCCATAATTTTATGTCTACGTGACAATAGAATTCAGAAACTTGAAGA
TTCACTACTTGCTTTAGTTGAATCAAATCTAAGAGATGGTCCATTTTATTTCAATGTTTTCCCAAACCTAAATTTGTCTCTGTTTTCAACAATCAGTAATGTTTTGAGTG
TCCACTTTTTGGTAAAAGGGCTTGATCAAATTCCAAAAGAGAGTGCCCCAATTGTGGTGACATGTAGAACATGTTACAAGTTGAACCAAAACAATTTTGGATCAGAAGCT
TTGATTGAGAGTCCTGTTGGGAAAACAGTGTTTTTTCAGACAGAGATTTTTGGAGATACTGATGATGATGTTGTTCAAAAAGTTACTATGTGGAATCAAGTTCAATTGCC
TTCTGATTGGCCTCCTCAGCTGCATATACCTACGGTTCCTAGGTTGGTTTTTGGTTCTTCAAAAGTGGCTCAACAAAAACTTATCCAGACAACACGAACTCTCCCTGCCA
AAATCAACTCCCACGCGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATAGGCCTGGTTCAAATTGGTGTCAAAACCCTAACCAAAAAAATCCCTTCAAATGCTTCCATAATTTTATGTCTACGTGACAATAGAATTCAGAAACTTGAAGA
TTCACTACTTGCTTTAGTTGAATCAAATCTAAGAGATGGTCCATTTTATTTCAATGTTTTCCCAAACCTAAATTTGTCTCTGTTTTCAACAATCAGTAATGTTTTGAGTG
TCCACTTTTTGGTAAAAGGGCTTGATCAAATTCCAAAAGAGAGTGCCCCAATTGTGGTGACATGTAGAACATGTTACAAGTTGAACCAAAACAATTTTGGATCAGAAGCT
TTGATTGAGAGTCCTGTTGGGAAAACAGTGTTTTTTCAGACAGAGATTTTTGGAGATACTGATGATGATGTTGTTCAAAAAGTTACTATGTGGAATCAAGTTCAATTGCC
TTCTGATTGGCCTCCTCAGCTGCATATACCTACGGTTCCTAGGTTGGTTTTTGGTTCTTCAAAAGTGGCTCAACAAAAACTTATCCAGACAACACGAACTCTCCCTGCCA
AAATCAACTCCCACGCGACATGA
Protein sequenceShow/hide protein sequence
MNIGLVQIGVKTLTKKIPSNASIILCLRDNRIQKLEDSLLALVESNLRDGPFYFNVFPNLNLSLFSTISNVLSVHFLVKGLDQIPKESAPIVVTCRTCYKLNQNNFGSEA
LIESPVGKTVFFQTEIFGDTDDDVVQKVTMWNQVQLPSDWPPQLHIPTVPRLVFGSSKVAQQKLIQTTRTLPAKINSHAT