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Chy2G039950 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G039950
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSWIB domain-containing protein
Genome locationchrH02:18023970..18034347
RNA-Seq ExpressionChy2G039950
SyntenyChy2G039950
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]4.24e-1786.05Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+V+CDE LKSI LGKPKVELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]6.68e-1683.72Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

XP_023545091.1 upstream activation factor subunit UAF30 [Cucurbita pepo subsp. pepo]6.68e-1683.72Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]4.74e-1686.05Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KN K
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]3.00e-1788.37Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

TrEMBL top hitse value%identityAlignment
A0A0A0L2E1 SWIB domain-containing protein2.2e-1186.05Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGKPKVELAELPALIKLHF KN K
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

A0A1S3BL41 upstream activation factor subunit spp273.4e-1286.05Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+V+CDE LKSI LGKPKVELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

A0A6J1ELR1 upstream activation factor subunit UAF302.9e-1183.72Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE LKSI LGK K+ELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

A0A6J1HWJ0 protein TRI1 isoform X14.9e-1183.72Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE L+SI LGK KVELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X24.9e-1183.72Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DPTNKN+VICDE L+SI LGK KVELAELPALIKLHF KNPK
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein4.4e-0443.9Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN
        ++P NK  + CD+ LK+IF GK KV + E+  L+  HF K+
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.0e-0443.9Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN
        ++P NK  ++CDE LK+IF GK  V   E+  L+  HF K+
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKN

AT4G26810.1 SWIB/MDM2 domain superfamily protein2.8e-1169.77Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DP NKN+VICDE LKSI LGK +VEL +LP+LIKLHF K  K
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

AT4G26810.2 SWIB/MDM2 domain superfamily protein2.8e-1169.77Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK
        +DP NKN+VICDE LKSI LGK +VEL +LP+LIKLHF K  K
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK

AT4G34290.1 SWIB/MDM2 domain superfamily protein4.4e-0450Show/hide
Query:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHF
        +DP NK  ++CDE LK IF GK +V   E+  LI  HF
Subjt:  KDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGAATATGCTATGCTACTCCACTGCATACTTACCAAGCAAGTGTTCGATTTGGGAACTATTATCAAAGGGCACTCCTTGCCAAGGCGCCAAACCCTTCCCCT
CCACAGTGGAGAAATTGTGCTTAAGTTTCCACAAACAAGGCTTAATCGAGTAATCACCTTCTATTATAACAAAGAGGAAGAGCGCTGCCTTAAGACTTTGAGAAAGGATA
AATTTGATGAAGAAGAAACGGAAGAGAATTCTCTACCGCCTCTGCCGCTTAGGAGGAAGGCCAAGTCAACCTCAACTTCACTTGCTAAGAAAGTAAAGCATTCATTTAGA
AGAATCATTTTCCTAGAGCTTGTGGTAGAGAGTACCTTAAGTGGAGCTAGAAAGGATCCTACCAACAAGAATTTGGTCATTTGTGATGAGAATTTAAAGAGTATATTTCT
GGGCAAGCCCAAAGTTGAACTAGCTGAACTTCCTGCACTGATTAAATTACATTTTACCAAAAATCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGAATATGCTATGCTACTCCACTGCATACTTACCAAGCAAGTGTTCGATTTGGGAACTATTATCAAAGGGCACTCCTTGCCAAGGCGCCAAACCCTTCCCCT
CCACAGTGGAGAAATTGTGCTTAAGTTTCCACAAACAAGGCTTAATCGAGTAATCACCTTCTATTATAACAAAGAGGAAGAGCGCTGCCTTAAGACTTTGAGAAAGGATA
AATTTGATGAAGAAGAAACGGAAGAGAATTCTCTACCGCCTCTGCCGCTTAGGAGGAAGGCCAAGTCAACCTCAACTTCACTTGCTAAGAAAGTAAAGCATTCATTTAGA
AGAATCATTTTCCTAGAGCTTGTGGTAGAGAGTACCTTAAGTGGAGCTAGAAAGGATCCTACCAACAAGAATTTGGTCATTTGTGATGAGAATTTAAAGAGTATATTTCT
GGGCAAGCCCAAAGTTGAACTAGCTGAACTTCCTGCACTGATTAAATTACATTTTACCAAAAATCCCAAGTGA
Protein sequenceShow/hide protein sequence
MPFEYAMLLHCILTKQVFDLGTIIKGHSLPRRQTLPLHSGEIVLKFPQTRLNRVITFYYNKEEERCLKTLRKDKFDEEETEENSLPPLPLRRKAKSTSTSLAKKVKHSFR
RIIFLELVVESTLSGARKDPTNKNLVICDENLKSIFLGKPKVELAELPALIKLHFTKNPK