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Chy2G040840 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G040840
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchrH02:20229079..20229561
RNA-Seq ExpressionChy2G040840
SyntenyChy2G040840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046551.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.32e-2386.89Show/hide
Query:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM
        ME+LLLLLVFHANAPPSTA PPP  PAQLKRIHIGGALSPF FTYSVAVKYVA+I WD LM
Subjt:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM

KAE8652979.1 hypothetical protein Csa_021104, partial [Cucumis sativus]6.03e-3598.36Show/hide
Query:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM
        MERLLLLLVFHANAPPSTAPPPPP PAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM
Subjt:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM

KAG6587964.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.34e-1062.5Show/hide
Query:  MERLLLLLVFHA-----NAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDL
        MERLLL+L FHA     NAPPS+APP     A LKR HIG A SP  FTYS AVK   VI WDL
Subjt:  MERLLLLLVFHA-----NAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDL

KAG7021854.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]1.34e-1062.5Show/hide
Query:  MERLLLLLVFHA-----NAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDL
        MERLLL+L FHA     NAPPS+APP     A LKR HIG A SP  FTYS AVK   VI WDL
Subjt:  MERLLLLLVFHA-----NAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDL

TrEMBL top hitse value%identityAlignment
A0A5A7TZ04 Pentatricopeptide repeat-containing protein2.3e-1986.89Show/hide
Query:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM
        ME+LLLLLVFHANAPPSTA  PPP PAQLKRIHIGGALSPF FTYSVAVKYVA+I WD LM
Subjt:  MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGCTGCTTCTACTGCTCGTCTTCCATGCAAATGCACCGCCGTCAACCGCTCCTCCTCCTCCTCCTGGACCTGCCCAGCTGAAAAGAATTCATATTGGA
GGAGCTTTATCTCCATTCTTCTTCACTTATTCAGTGGCAGTGAAATACGTTGCTGTAATATATTGGGATTTGCTGATG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGCTGCTTCTACTGCTCGTCTTCCATGCAAATGCACCGCCGTCAACCGCTCCTCCTCCTCCTCCTGGACCTGCCCAGCTGAAAAGAATTCATATTGGA
GGAGCTTTATCTCCATTCTTCTTCACTTATTCAGTGGCAGTGAAATACGTTGCTGTAATATATTGGGATTTGCTGATG
Protein sequenceShow/hide protein sequence
MERLLLLLVFHANAPPSTAPPPPPGPAQLKRIHIGGALSPFFFTYSVAVKYVAVIYWDLLM