; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G041950 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G041950
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationchrH02:22564479..22570942
RNA-Seq ExpressionChy2G041950
SyntenyChy2G041950
Gene Ontology termsGO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008906 - HAT, C-terminal dimerisation domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048411.1 transposase [Cucumis melo var. makuwa]5.19e-0981.82Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSDQFEVL R+ RDILAIPV TVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
KAA0051170.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]3.90e-0878.79Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSD+FEVL ++ RDILAIPVFTVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
KAA0058356.1 transposase [Cucumis melo var. makuwa]2.86e-0878.79Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSDQFEVL  + RDILAIPV TVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
TYJ97439.1 transposase [Cucumis melo var. makuwa]5.95e-0981.82Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSDQFEVL R+ RDILAIPV TVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
TYK14635.1 transposase [Cucumis melo var. makuwa]5.06e-0872.73Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMN D+FEVL  + RDIL IPV TVAP+
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
TrEMBL top hitse value%identityAlignment
A0A5A7TXF5 Zinc finger BED domain-containing protein RICESLEEPER 3-like6.2e-0675.76Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMN+D+FEVL ++ RDILAIPVFTVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
A0A5A7U4C1 Transposase4.7e-0687.1Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVA
        ILQWWKMNSDQFEVL R+ RDILAIPV TVA
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVA
A0A5A7U7I9 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.8e-0678.79Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSD+FEVL ++ RDILAIPVFTVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
A0A5D3BEH6 Transposase4.7e-0687.1Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVA
        ILQWWKMNSDQFEVL R+ RDILAIPV TVA
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVA
A0A5D3BVD4 Zinc finger BED domain-containing protein RICESLEEPER 3-like8.1e-0675.76Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
        ILQWWKMNSD+FEVL  + RDILAIPV+TVA +
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18560.1 BED zinc finger ;hAT family dimerisation domain7.5e-0440.54Show/hide
Query:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQWRTC
        +L WWK+NS ++  LS + RD LA+   + AP+   C
Subjt:  ILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQWRTC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCCAAAACGATTTTGTCTATGACATGATTGTTGAGGAATTTGAAGGTGATATGACTACTGCACCTTTTGAATATGGGTCATCAGAGATTGATATCTATTTGTTGGAAA
CCAATGTTAGGAATGAAGGTGATTTTGACATATACTACAGTGGTGGAAGATGAATAGTGATCAATTTGAGGTTCTTAGTCGTATAGTTAGAGATATTTTGGCTATTCCAG
TTTTTACTGTAGCGCCCCAGTGGAGGACATGTTGTTGATTCATGACGTTGCTCATTGGCTCCTAAAATAGTGGAGGCTCTCATATGTACTCAAAATTGGATAAATTCTAA
TCCAATAGATCTTCAAGTTCAACATGAATTGGAAGATGCTTTAAAAGTTGAAGAAGGATTCCGAGTGGTTATGGATAATGAAAAAGAGCTTGAAGATCTTTCAGATTATG
CAAAATTGTCAATTACTAACTACTTACTAATGTTGACCAAAACTTTTAATGTTTGTATCGTAGTGTTTG
mRNA sequenceShow/hide mRNA sequence
ATCCCAAAACGATTTTGTCTATGACATGATTGTTGAGGAATTTGAAGGTGATATGACTACTGCACCTTTTGAATATGGGTCATCAGAGATTGATATCTATTTGTTGGAAA
CCAATGTTAGGAATGAAGGTGATTTTGACATATACTACAGTGGTGGAAGATGAATAGTGATCAATTTGAGGTTCTTAGTCGTATAGTTAGAGATATTTTGGCTATTCCAG
TTTTTACTGTAGCGCCCCAGTGGAGGACATGTTGTTGATTCATGACGTTGCTCATTGGCTCCTAAAATAGTGGAGGCTCTCATATGTACTCAAAATTGGATAAATTCTAA
TCCAATAGATCTTCAAGTTCAACATGAATTGGAAGATGCTTTAAAAGTTGAAGAAGGATTCCGAGTGGTTATGGATAATGAAAAAGAGCTTGAAGATCTTTCAGATTATG
CAAAATTGTCAATTACTAACTACTTACTAATGTTGACCAAAACTTTTAATGTTTGTATCGTAGTGTTTG
Protein sequenceShow/hide protein sequence
IPKRFCLHDC*GI*R*YDYCTF*IWVIRD*YLFVGNQC*E*R*F*HILQWWKMNSDQFEVLSRIVRDILAIPVFTVAPQWRTCCFMTLLIGS*NSGGSHMYSKLDKF*SN
RSSSST*IGRCFKSRRIPSGYG**KRA*RSFRLCKIVNY*LLTNVDQNF*CLYRSVX