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Chy2G041960 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G041960
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationchrH02:22564525..22580206
RNA-Seq ExpressionChy2G041960
SyntenyChy2G041960
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025331.1 transposase [Cucumis melo var. makuwa]5.15e-5160.71Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVV
        D   N+ KDFVYD IVEEFE D TT PFE GS EIDIYLLE NVR EGDFDI          +   GR     L   V  +     F       +GG VV
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVV

Query:  DS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN
        DS RCSLAPK V+ALICTQNW+NS+PIDLQ+QHELE+A K EEGFRVV++NEKELEDL D+ KLSITN
Subjt:  DS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN

KAA0038068.1 transposase [Cucumis melo var. makuwa]2.24e-5262.42Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYYSGGR*IVINLRFLVV*---LEIFWLFQFLL*RPS----GGHVVDS*
        D   N  +DFVYD IVEEFE D TT PFE GSSEIDIYLLE NVR EGDFDI        +   RF V+     +IF +    +   S    GGHVVDS 
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYYSGGR*IVINLRFLVV*---LEIFWLFQFLL*RPS----GGHVVDS*

Query:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN
        RCSL PKIVEALICTQNW+NS+PI L +QHE EDA K EEGF+VVM+NEKELEDLSD+ KLSIT+
Subjt:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN

KAA0040954.1 transposase [Cucumis melo var. makuwa]3.73e-5160.24Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYY----SGGR*IVINLR---FLVV*LEIFWLFQFLL*RPSGGHVVDS*
        D   N  +DFVYD IVE+FE D TT+ FE GSSEIDIYLLE NVR EGDFDI      +  R  V+       L + + I            GG VVDS 
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYY----SGGR*IVINLR---FLVV*LEIFWLFQFLL*RPSGGHVVDS*

Query:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY
        RCSLAPK VEALICTQNW+NS+PI LQ QHELE+A K EEGF+VVM+NEKELEDLSD+ KLSIT+Y
Subjt:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY

KAA0041191.1 transposase [Cucumis melo var. makuwa]1.19e-5162.11Show/hide
Query:  KDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCSL
        +D VYD IVEEFE D TT PFE GSS+IDIYLLE NVR EGDFDI          +   GR     L   V  +     F       +GG VVDS RCSL
Subjt:  KDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCSL

Query:  APKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN
        APKIVE LICTQNWINS+PIDLQ+QHELE+A K EEGFRVVM+NEKELEDL D+ KLSIT+
Subjt:  APKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN

KAA0048472.1 transposase [Cucumis melo var. makuwa]6.52e-5259.76Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYY-----SGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RC
        D   N  +DFVYD IVEEFE D TT PFE  SSEIDIYLLE NVR EGDFDI       S    ++  +   ++ + +  +        +GG V+DS RC
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYY-----SGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RC

Query:  SLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY
        SLAPK VEALICTQNW+NSNPI LQ QHELE+A K EEGFRVVM+NEKELEDL D+ KLSIT+Y
Subjt:  SLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY

TrEMBL top hitse value%identityAlignment
A0A5A7SM58 Transposase2.9e-4159.41Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*I--VINLRFLVV*LEIFWLFQFLL*RPSGGH
        D   N+ KDFVYD IVEEFE D TT PFE GS EIDIYLLE NVR EGDFDI          +   GR    ++++    V  E  +         +GG 
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDI----------YYSGGR*I--VINLRFLVV*LEIFWLFQFLL*RPSGGH

Query:  VVDS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN
        VVDS RCSLAPK V+ALICTQNW+NS+PIDLQ+QHELE+A K EEGFRVV++NEKELEDL D+ KLSITN
Subjt:  VVDS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN

A0A5A7SRK8 Zinc finger BED domain-containing protein RICESLEEPER 3-like4.9e-4161.35Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCS
        D   N  +DFVYD IVEEFE D TT PFE GSSEIDIYLLE NVR EGDFDI      +  R  V+      +         F     +GG VVDS RCS
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCS

Query:  LAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY
        LAPK VEALICTQNW+NS+PI LQ QHELE+A K EEGFRVVM+NEKELEDL D+ KLSI++Y
Subjt:  LAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY

A0A5A7T5E5 Transposase6.4e-4162.42Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYYSGGR*IVINLRFLV---V*LEIFWLFQFLL*RPS----GGHVVDS*
        D   N  +DFVYD IVEEFE D TT PFE GSSEIDIYLLE NVR EGDFDI        +   RF V   +  +IF +    +   S    GGHVVDS 
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYYSGGR*IVINLRFLV---V*LEIFWLFQFLL*RPS----GGHVVDS*

Query:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN
        RCSL PKIVEALICTQNW+NS+PI L +QHE EDA K EEGF+VVM+NEKELEDLSD+ KLSIT+
Subjt:  RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITN

A0A5A7USY1 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.3e-4161.35Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCS
        D   N  +DFVYD IVEEFE D TT PFE GSS+IDIYLLE NVR EGDFDI      +  R  V+      +               +GG VVDS RCS
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVINLRFLVV*LEIFWLFQFLL*RPSGGHVVDS*RCS

Query:  LAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY
        LAPK VEALICTQNW+NS+PI LQ QHELE+A K EEGFRVVM+NEKELEDLSD+ KLSIT+Y
Subjt:  LAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY

A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.7e-4161.54Show/hide
Query:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVIN------LRFLVV*LEIFWLFQFLL*RPSGGHVV
        D   N  +DFVYD IVEEFE D TT PFE GSSEIDIYLLE NVR EGDFDI      +  R  V+       L  LV  +     F       +GG VV
Subjt:  DPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIY----YSGGR*IVIN------LRFLVV*LEIFWLFQFLL*RPSGGHVV

Query:  DS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY
        DS RCSLAPK VEALICTQNW+NS+PI LQ QHELE+A K EEGFRVVM+NEKELEDL D+ KLSIT+Y
Subjt:  DS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATATGTTGATTGATTATGAGAGAAAACATGTTCCCAAAACGTCGAAAAAAGGAACAATGTCAAAGAATCGACCCAACTTAGAACAGTCTGAAAGATTTTGTCTATGA
CATGATTGTTGAGGAATTTGAAGGTGATATGACTACTGCACCTTTTGAATATGGGTCATCAGAGATTGATATCTATTTGTTGGAAACCAATGTTAGGAATGAAGGTGATT
TTGACATATACTACAGTGGTGGAAGATGAATAGTGATCAATTTGAGGTTCTTAGTCGTATAGTTAGAGATATTTTGGCTATTCCAGTTTTTACTGTAGCGCCCCAGTGGA
GGACATGTTGTTGATTCATGACGTTGCTCATTGGCTCCTAAAATAGTGGAGGCTCTCATATGTACTCAAAATTGGATAAATTCTAATCCAATAGATCTTCAAGTTCAACA
TGAATTGGAAGATGCTTTAAAAGTTGAAGAAGGATTCCGAGTGGTTATGGATAATGAAAAAGAGCTTGAAGATCTTTCAGATTATGCAAAATTGTCAATTACTAACTAC
mRNA sequenceShow/hide mRNA sequence
TTTATATGTTGATTGATTATGAGAGAAAACATGTTCCCAAAACGTCGAAAAAAGGAACAATGTCAAAGAATCGACCCAACTTAGAACAGTCTGAAAGATTTTGTCTATGA
CATGATTGTTGAGGAATTTGAAGGTGATATGACTACTGCACCTTTTGAATATGGGTCATCAGAGATTGATATCTATTTGTTGGAAACCAATGTTAGGAATGAAGGTGATT
TTGACATATACTACAGTGGTGGAAGATGAATAGTGATCAATTTGAGGTTCTTAGTCGTATAGTTAGAGATATTTTGGCTATTCCAGTTTTTACTGTAGCGCCCCAGTGGA
GGACATGTTGTTGATTCATGACGTTGCTCATTGGCTCCTAAAATAGTGGAGGCTCTCATATGTACTCAAAATTGGATAAATTCTAATCCAATAGATCTTCAAGTTCAACA
TGAATTGGAAGATGCTTTAAAAGTTGAAGAAGGATTCCGAGTGGTTATGGATAATGAAAAAGAGCTTGAAGATCTTTCAGATTATGCAAAATTGTCAATTACTAACTAC
Protein sequenceShow/hide protein sequence
FICLIMRENMFPKRRKKEQCQRIDPT*NSLKDFVYDMIVEEFEGDMTTAPFEYGSSEIDIYLLETNVRNEGDFDIYYSGGRIVINLRFLVV*LEIFWLFQFLL*RPSGGH
VVDS*RCSLAPKIVEALICTQNWINSNPIDLQVQHELEDALKVEEGFRVVMDNEKELEDLSDYAKLSITNY