; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G042070 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G042070
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
Genome locationchrH02:22838303..22838524
RNA-Seq ExpressionChy2G042070
SyntenyChy2G042070
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033523.1 hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa]2.10e-2975.34Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LG ++I+D  IRW  VLK+HGEFYYLSH WEWLELAVARN T+LKRA LF+ VMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]5.33e-3078.08Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LGCQ+I+D  IRW  VLK+HGEFYYLSH WEWLELAVARNT +LKR  LF+AVMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

TYJ95665.1 hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa]1.67e-3075.34Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LG ++I+D  IRW  VLK+HGEFYYLSH WEWLELAVARN T+LKRA LF+ VMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

TYK06154.1 uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa]1.63e-2873.91Show/hide
Query:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        +I+D   RW  VLK+HGEFYYLSH WEWLEL VARNT +LK+A LF+ VMAFLYTY RNSD VRAFCEA
Subjt:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]3.44e-3183.56Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LG +IINDP IRW NVLK+HGEFYYL H WEWLEL VARNT VLKRASLFNAVMA LYTY RNSDI RAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

TrEMBL top hitse value%identityAlignment
A0A5A7SM27 PMD domain-containing protein5.0e-2172.46Show/hide
Query:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        +I+D   RW  VLK+HGEFYYLSH WEWLEL VA+NT +LK+A LF+ VMAFLYTY RNSD VRAFCEA
Subjt:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

A0A5A7SST7 PMD domain-containing protein5.4e-2375.34Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LG ++I+D  IRW  VLK+HGEFYYLS HWEWLELAVARN T+LKRA LF+ VMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

A0A5A7U4C3 Uncharacterized protein9.8e-2578.08Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LGCQ+I+D  IRW  VLK+HGEFYYLSH WEWLELAVARNT +LKR  LF+AVMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

A0A5D3BB02 PMD domain-containing protein5.4e-2375.34Show/hide
Query:  LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        LG ++I+D  IRW  VLK+HGEFYYLS HWEWLELAVARN T+LKRA LF+ VMA +YTY RNSDIVRAFCEA
Subjt:  LGCQIINDPNIRWDNVLKIHGEFYYLS-HWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

A0A5D3C4B8 PMD domain-containing protein2.3e-2173.91Show/hide
Query:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA
        +I+D   RW  VLK+HGEFYYLSH WEWLEL VARNT +LK+A LF+ VMAFLYTY RNSD VRAFCEA
Subjt:  IINDPNIRWDNVLKIHGEFYYLSH-WEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTTGTCAAATTATAAACGACCCAAATATTCGTTGGGACAATGTGCTCAAGATCCATGGAGAATTTTATTATCTTTCTCATTGGGAATGGTTAGAGCTCGCCGT
TGCTAGAAATACGACGGTACTCAAGCGAGCTTCGCTATTTAATGCTGTGATGGCTTTCTTGTATACATATGTTCGCAATAGTGACATCGTTCGGGCTTTCTGTGAGGCAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTTGTCAAATTATAAACGACCCAAATATTCGTTGGGACAATGTGCTCAAGATCCATGGAGAATTTTATTATCTTTCTCATTGGGAATGGTTAGAGCTCGCCGT
TGCTAGAAATACGACGGTACTCAAGCGAGCTTCGCTATTTAATGCTGTGATGGCTTTCTTGTATACATATGTTCGCAATAGTGACATCGTTCGGGCTTTCTGTGAGGCAT
GA
Protein sequenceShow/hide protein sequence
MLGCQIINDPNIRWDNVLKIHGEFYYLSHWEWLELAVARNTTVLKRASLFNAVMAFLYTYVRNSDIVRAFCEA