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Chy2G042290 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G042290
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
Genome locationchrH02:23288388..23288822
RNA-Seq ExpressionChy2G042290
SyntenyChy2G042290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]4.40e-1035.16Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----
        MLF E  IRDDLKD T LA  L                C L         C   F Q  S+++   F   SL  + T             HGL L     
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----

Query:  -----------SHALRPWLVSSLFWH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
                    H +  WL      H  LPT  R  +    S +G       SIYF EYEARELIHNGARIQWH SL N++K
Subjt:  -----------SHALRPWLVSSLFWH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

KAA0042070.1 hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa]1.33e-1034.29Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVKFNN*SLDFSRT-------------HGLSL--------
        +LFTE  I++DLKD T L V L                C L    +++    P  G  L    F   SL  + T             HGL L        
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVKFNN*SLDFSRT-------------HGLSL--------

Query:  --------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
                 H +  WL      H  LPT  R  +  +   F    SIYF EYEARELIHNG RIQWH +LPN+NK
Subjt:  --------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]1.82e-1037.33Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLFWH-SLPTF
        MLF E  IRDDLKD T   V   ++A  I S    +     +G  +   + +P  G+           +DF         H +  WL      H  LPT 
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLFWH-SLPTF

Query:  ERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
         R  +    S +G       SIYF EYEARELIHNGARIQWH SL N++K
Subjt:  ERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]9.79e-1136.71Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLL----CVSA*---GIISSP*SI*DCKLNGR-RIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLF
        MLF E  I+DDLKD T LA  L    C+      G    P       L     IY  +       +         S    R     L + +  WL     
Subjt:  MLFTERSIRDDLKDAT*LAVLL----CVSA*---GIISSP*SI*DCKLNGR-RIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLF

Query:  WH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
         H  LPT  R  +    S +G      RSIYF EYEARELIHNGARIQWHT+L N++K
Subjt:  WH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]9.79e-1136.71Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLL----CVSA*---GIISSP*SI*DCKLNGR-RIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLF
        MLF E  I+DDLKD T LA  L    C+      G    P       L     IY  +       +         S    R     L + +  WL     
Subjt:  MLFTERSIRDDLKDAT*LAVLL----CVSA*---GIISSP*SI*DCKLNGR-RIYL*SCSPSFGQHLSWVKFNN*SLDFSRTHGLSLSHALRPWLVSSLF

Query:  WH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
         H  LPT  R  +    S +G      RSIYF EYEARELIHNGARIQWHT+L N++K
Subjt:  WH-SLPTFERSSR----SQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

TrEMBL top hitse value%identityAlignment
A0A5A7SHN8 PMD domain-containing protein1.8e-0633.71Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----
        MLF E  I+DDLKD T LA  L                C L         C   F Q  S+++   F   SL  + T             HGL L     
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----

Query:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
                    H +  WL      H  LPT  R  +  +        SIYF EYEARELIHNGARIQWH +L N++K
Subjt:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

A0A5A7SQC9 PMD domain-containing protein2.1e-0734.83Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----
        MLF E  IRDDLKD T LA  L                C L         C   F Q  S+++   F   SL  + T             HGL L     
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----

Query:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
                    H +  WL      H  LPT  R  +  +        SIYF EYEARELIHNGARIQWH SL N++K
Subjt:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

A0A5A7TFX8 Uncharacterized protein1.4e-0650Show/hide
Query:  HALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
        H +  WL      H  LPT  R  +  +   F   +SIYF EYEA+ELIHNGARIQWH +L N+NK
Subjt:  HALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

A0A5D3C3D7 PMD domain-containing protein4.8e-0733.71Show/hide
Query:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----
        MLF E  I+DDLKD T LA  L                C L         C   F Q  S+++   F   SL  + T             HGL L     
Subjt:  MLFTERSIRDDLKDAT*LAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVK---FNN*SLDFSRT-------------HGLSL-----

Query:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
                    H +  WL      H  LPT  R  +  +        SIYF EYEARELIHNGARIQWH +L N++K
Subjt:  -----------SHALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

A0A5D3D2A0 PMD domain-containing protein6.2e-0751.52Show/hide
Query:  HALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK
        H +  WL      H  LPT  R  +  +   F    SIYF EYEARELIHNG RIQWH +LPN+NK
Subjt:  HALRPWLVSSLFWH-SLPTFERSSRSQDG*LFW*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTTACAGAACGTAGCATAAGGGACGATCTGAAGGATGCAACATAACTAGCTGTGCTTCTTTGTGTTTCTGCATAAGGGATCATTTCTTCGCCCTAGAGTATTTA
GGATTGCAAGCTCAATGGTCGACGAATCTATCTATAGTCTTGCAGTCCTAGTTTTGGTCAACATTTATCATGGGTTAAGTTTAATAACTAAAGCCTCGACTTCAGTAGGA
CGCATGGACTTTCACTTTCCCATGCATTACGCCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTTTCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTT
TTCTGGTGAAGCAGGTCTATTTATTTCGAAGAATATGAGGCACGAGAACTAATTCATAATGGTGCAAGAATTCAGTGGCATACGAGTCTTCCAAACCAGAATAAA
mRNA sequenceShow/hide mRNA sequence
ATGTTATTTACAGAACGTAGCATAAGGGACGATCTGAAGGATGCAACATAACTAGCTGTGCTTCTTTGTGTTTCTGCATAAGGGATCATTTCTTCGCCCTAGAGTATTTA
GGATTGCAAGCTCAATGGTCGACGAATCTATCTATAGTCTTGCAGTCCTAGTTTTGGTCAACATTTATCATGGGTTAAGTTTAATAACTAAAGCCTCGACTTCAGTAGGA
CGCATGGACTTTCACTTTCCCATGCATTACGCCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTTTCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTT
TTCTGGTGAAGCAGGTCTATTTATTTCGAAGAATATGAGGCACGAGAACTAATTCATAATGGTGCAAGAATTCAGTGGCATACGAGTCTTCCAAACCAGAATAAA
Protein sequenceShow/hide protein sequence
MLFTERSIRDDLKDATLAVLLCVSA*GIISSP*SI*DCKLNGRRIYL*SCSPSFGQHLSWVKFNNSLDFSRTHGLSLSHALRPWLVSSLFWHSLPTFERSSRSQDG*LFW
*SRSIYFEEYEARELIHNGARIQWHTSLPNQNK