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Chy2G042300 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G042300
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
Genome locationchrH02:23289282..23290284
RNA-Seq ExpressionChy2G042300
SyntenyChy2G042300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031667.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.56e-3161.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK
        M  TL++++ EHK+ESD+SKS+ HWKR LKK KSPL+ +LEGL+++D+D+SL GPH+ D+TIE VG  KTP  K A+QSLRPSAL EEIR+ KM +G K
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK

KAA0044959.1 hypothetical protein E6C27_scaffold74G002650 [Cucumis melo var. makuwa]2.15e-3669.89Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK
        MTPTLE+++ EHK+ESD++KS+RHWKRPLKK KSPL+++LEGLI++ SD+SLTGPH+ D+  EEVG  KTP  K AKQSLRPSALLEEIR+ K
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK

KAA0053996.1 hypothetical protein E6C27_scaffold318G00430 [Cucumis melo var. makuwa]2.69e-3163.64Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK
        MT TLE+ + EHK+ESD+SKS+RHWKRP +  +SPL+++LEGLI + SD+SL GPH  D+ IEEVG  KTP  K A+Q LRPSALLEEIR+ KMKV  K
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]3.01e-3162.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD
        M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SLTGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ 
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD

Query:  KMKVGEK
        KM VG K
Subjt:  KMKVGEK

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]3.01e-3162.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD
        M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SLTGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ 
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD

Query:  KMKVGEK
        KM VG K
Subjt:  KMKVGEK

TrEMBL top hitse value%identityAlignment
A0A5A7TUP1 Uncharacterized protein2.0e-2869.89Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK
        MTPTLE+++ EHK+ESD++KS+RHWKRPLKK KSPL+++LEGLI++ SD+SLTGPH+ D+  EEVG  KTP  K AKQSLRPSALLEEIR+ K
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDK

A0A5A7V4F4 PMD domain-containing protein1.9e-2662.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD
        M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SLTGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ 
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD

Query:  KMKVGEK
        KM VG K
Subjt:  KMKVGEK

A0A5D3BRA8 PMD domain-containing protein1.9e-2662.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD
        M P LE+++ EHK+ESD+SKS+ HWKRPLK+         +SPL+D+LEGLI+ DSD+SLTGPH  D+T EEVG  KTP  K A+QSLRPSALLEEIR+ 
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKK--------VKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQD

Query:  KMKVGEK
        KM VG K
Subjt:  KMKVGEK

A0A5D3BW91 Uncharacterized protein3.5e-2556.2Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVK----------------------SPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQ
        M P L +++ EHK+ESD+SKS+RHWKRPLKK K                      SPL+D+LEGLI+ DSD+SL GPH  D+  EEVG  KTP  K A+Q
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVK----------------------SPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQ

Query:  SLRPSALLEEIRQDKMKVGEK
        SLRPSALLEEIR+ KM VGEK
Subjt:  SLRPSALLEEIRQDKMKVGEK

A0A5D3BZM5 Putative mitochondrial protein5.4e-2661.62Show/hide
Query:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK
        M  TL++++ EHK+ESD+SKS+ HWKR LKK KSPL+ +LEGL+++D+D+SL GPH+ D+TIE VG  KTP  K A+QSLRPSAL EEIR+ KM +G K
Subjt:  MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVK*AKQSLRPSALLEEIRQDKMKVGEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCCTACCCTCGAGAAGGACTTGACGGAGCATAAAGAAGAGAGTGACAATAGCAAAAGTAATCGTCATTGGAAAAGACCTTTGAAGAAAGTGAAGTCACCTTTGGA
CGATTATCTTGAAGGACTTATAGATGTAGACAGTGATGACTCTCTAACAGGACCTCATATAGCTGATACAACCATTGAGGAAGTTGGTATTTTGAAGACACCAGCTGTAA
AATAAGCCAAACAATCCTTACGTCCATCTGCTCTTCTCGAGGAGATTCGTCAAGACAAGATGAAAGTGGGAGAAAAACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCCTACCCTCGAGAAGGACTTGACGGAGCATAAAGAAGAGAGTGACAATAGCAAAAGTAATCGTCATTGGAAAAGACCTTTGAAGAAAGTGAAGTCACCTTTGGA
CGATTATCTTGAAGGACTTATAGATGTAGACAGTGATGACTCTCTAACAGGACCTCATATAGCTGATACAACCATTGAGGAAGTTGGTATTTTGAAGACACCAGCTGTAA
AATAAGCCAAACAATCCTTACGTCCATCTGCTCTTCTCGAGGAGATTCGTCAAGACAAGATGAAAGTGGGAGAAAAACTTTAG
Protein sequenceShow/hide protein sequence
MTPTLEKDLTEHKEESDNSKSNRHWKRPLKKVKSPLDDYLEGLIDVDSDDSLTGPHIADTTIEEVGILKTPAVKAKQSLRPSALLEEIRQDKMKVGEKL*