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Chy2G042570 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G042570
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRibonucloprotein
Genome locationchrH02:23685774..23690821
RNA-Seq ExpressionChy2G042570
SyntenyChy2G042570
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2610778.1 hypothetical protein F2Q70_00009316 [Brassica cretica]1.52e-1182.5Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKSG
        LNRGISEFVVM AD EPLEILLHLPLLAEDKVLT +   G
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKSG
KAG2542206.1 hypothetical protein PVAP13_9NG849700 [Panicum virgatum]2.92e-1196.97Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
        LNRGISEFVVM ADTEPLEILLHLPLLAEDKVL
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
TQE02335.1 hypothetical protein C1H46_012104 [Malus baccata]2.93e-1193.94Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
        LNRGISEF+VM ADTEPLEILLHLPLLAEDKVL
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
XP_011002509.1 PREDICTED: NHP2-like protein 1 [Populus euphratica]2.34e-1179.49Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKS
        LNRGISEFVVM ADTEPLEILLHLPLLAEDKV+ + + +
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKS
XP_035816088.1 NHP2-like protein 1 isoform X1 [Zea mays]2.33e-1186.84Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASK
        LNRGISEFVVM ADTEPLEILLHLPLLAEDKVL   S+
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASK
TrEMBL top hitse value%identityAlignment
A0A1D6MWN4 Ribonucloprotein7.5e-0886.84Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASK
        LNRGISEFVVM ADTEPLEILLHLPLLAEDKVL   S+
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASK
A0A3L6FA43 Ribonucloprotein1.3e-0796.97Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
        LNRGISEFVVM ADTEPLEILLHLPLLAEDKVL
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
A0A3P6A092 Ribonucloprotein1.3e-0794.12Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLT
        LNRGISEFVVM AD EPLEILLHLPLLAEDKVLT
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLT
A0A3P6EVA5 Ribonucloprotein2.2e-0784.62Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKS
        LNRGISEFVVM AD EPLEILLHLPLLAEDKV T++S+S
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKS
A0A540MU60 Ribonucloprotein1.7e-0793.94Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
        LNRGISEF+VM ADTEPLEILLHLPLLAEDKVL
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKVL
SwissProt top hitse value%identityAlignment
O74690 13 kDa ribonucleoprotein-associated protein1.9e-0887.1Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF+VM ADTEP+EILLHLPLL EDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
P55769 NHP2-like protein 17.2e-0883.87Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF+VM AD EPLEI+LHLPLL EDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
Q3B8S0 NHP2-like protein 17.2e-0883.87Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF+VM AD EPLEI+LHLPLL EDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
Q5ANL6 13 kDa ribonucleoprotein-associated protein2.5e-0883.87Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF++M ADTEP+EILLHLPLL EDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
Q6BLQ3 13 kDa ribonucleoprotein-associated protein2.5e-0883.87Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF++M ADTEP+EILLHLPLL EDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.7e-1093.55Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEF+VM ADTEPLEILLHLPLLAEDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein4.2e-1169.39Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKV---LTVASKSGRAGVVI
        LNRGISEF+VM ADTEPLEILLHLPLLAEDKV   L + S S  + +V+
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKV---LTVASKSGRAGVVI
AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.9e-1093.55Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEFVVM AD EPLEILLHLPLLAEDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.9e-1093.55Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
        LNRGISEFVVM AD EPLEILLHLPLLAEDK
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDK
AT5G20160.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.7e-1093.75Show/hide
Query:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKV
        LNRGISEFVVM AD EPLEILLHLPLLAEDKV
Subjt:  LNRGISEFVVMVADTEPLEILLHLPLLAEDKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAACAGAGGTATATCTGAGTTTGTCGTAATGGTTGCGGATACGGAGCCTCTTGAAATCCTTCTACATCTTCCTCTGCTAGCTGAGGATAAGGTTCTGACTGTTGC
ATCAAAGAGTGGGCGTGCCGGAGTGGTTATCGGGCATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAACAGAGGTATATCTGAGTTTGTCGTAATGGTTGCGGATACGGAGCCTCTTGAAATCCTTCTACATCTTCCTCTGCTAGCTGAGGATAAGGTTCTGACTGTTGC
ATCAAAGAGTGGGCGTGCCGGAGTGGTTATCGGGCATGACTAG
Protein sequenceShow/hide protein sequence
MLNRGISEFVVMVADTEPLEILLHLPLLAEDKVLTVASKSGRAGVVIGHD