CuGenDBv2

Gene ID	Chy2G042590
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chrH02:23719996..23720932
RNA-Seq Expression	Chy2G042590
Synteny	Chy2G042590
Gene Ontology terms	GO:0009451 - RNA modification (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003723 - RNA binding (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK26926.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.50e-160

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKEK+KPDAVIFLSVLT CSRNRMV+MG Q FD+MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPG+SALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RKEMRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

XP_004150024.3 pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis sativus]

2.60e-160

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLN DPIISGALLDMYAKRGSIQESQRVFNETSK+SQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKE++KPDAVIFLSVLT CSRNRMVDMG QFF++MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPGVSALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK ++VRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

XP_008444010.1 PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis melo]

1.50e-160

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKEK+KPDAVIFLSVLT CSRNRMV+MG Q FD+MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPG+SALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RKEMRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

XP_022144828.1 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X2 [Momordica charantia]

3.90e-144

74.4

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+ME KPNEYTFG+V+NAISAG+DIS+KHGQRCHSHLIK+GL  DPIISGALLDMYAKRGSIQESQRVFNETSK+SQFAWT LI  YAQHGDY++V
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        +KLFEEMEKEK+KPDAVIFLS+LT CSRNRMV++G +FFD+MIKDHMIEP  EHYSCMVDMLGRAGRL+EAEE+L+ IP GP +SALQSLLG CR HGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        +M                            KGDWEK +EVRK MRERGV KEIGFSWVDVGNFGAS LYLHGFSSGDVSHPQSEEI RMA+Y+
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

XP_038878735.1 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1 [Benincasa hispida]

1.03e-149

77.47

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+ME KPNEYTFG+V+NAISAGE IS+KHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSK+SQFAWT LI  YAQHGDY+SV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        +KLFEEMEKEK+KPDAVIFLSVL  CSRNRMVDMG +FFD+MIKDHMIEP GEHYSCMVD+LGRAGRLEEAEE+L+ IP  PG+SALQSLLG CR HGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RK MRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEI RMA+YM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWF3 Uncharacterized protein

7.8e-131

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLN DPIISGALLDMYAKRGSIQESQRVFNETSK+SQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKE++KPDAVIFLSVLT CSRNRMVDMG QFF++MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPGVSALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK ++VRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

A0A1S3BA52 pentatricopeptide repeat-containing protein At4g32430, mitochondrial

4.6e-131

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKEK+KPDAVIFLSVLT CSRNRMV+MG Q FD+MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPG+SALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RKEMRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

A0A5A7TTA5 Pentatricopeptide repeat-containing protein

4.6e-131

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKEK+KPDAVIFLSVLT CSRNRMV+MG Q FD+MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPG+SALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RKEMRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

A0A5D3DTC6 Pentatricopeptide repeat-containing protein

4.6e-131

82.25

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+MEYKPNEYTFG+V+NAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWT LI  YAQHGDYESV
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        IKLFEEMEKEK+KPDAVIFLSVLT CSRNRMV+MG Q FD+MIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEIL+ IP GPG+SALQSLLG CRTHGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        EM                            KGDWEK +E+RKEMRERGV KEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

A0A6J1CUT6 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1

4.9e-117

74.4

Show/hide

Query:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV
        +F  A+ME KPNEYTFG+V+NAISAG+DIS+KHGQRCHSHLIK+GL  DPIISGALLDMYAKRGSIQESQRVFNETSK+SQFAWT LI  YAQHGDY++V
Subjt:  SFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESV

Query:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV
        +KLFEEMEKEK+KPDAVIFLS+LT CSRNRMV++G +FFD+MIKDHMIEP  EHYSCMVDMLGRAGRL+EAEE+L+ IP GP +SALQSLLG CR HGNV
Subjt:  IKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNV

Query:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM
        +M                            KGDWEK +EVRK MRERGV KEIGFSWVDVGNFGAS LYLHGFSSGDVSHPQSEEI RMA+Y+
Subjt:  EM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYM

SwissProt top hits

e value

%identity

Alignment

Q5G1T1 Pentatricopeptide repeat-containing protein At3g49170, chloroplastic

3.8e-42

32.85

Show/hide

Query:  YTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEKEKLK
        +TF ++++ ++     S++ G++ HS ++K+GL+ +  +  AL+ MY+K GSI  + RVFN    ++  +WT +I  +A+HG    V++ F +M +E +K
Subjt:  YTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEKEKLK

Query:  PDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-----------
        P+ V ++++L+ CS   +V  G + F+ M +DH I+P+ EHY+CMVD+L RAG L +A E ++ +P    V   ++ LG CR H N E+           
Subjt:  PDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-----------

Query:  -----------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF
                          G WE+ +E+R++M+ER ++KE G SW++VG+       +H F  GD +HP + +I+
Subjt:  -----------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF

Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic

1.2e-43

36.33

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        KPN  T  T++ + +A    +L  G+  H++ IK  L  D  +  AL+DMYAK G +Q S++VF++  +++   W V+I  Y  HG+ +  I L   M  
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIG-PGVSALQSLLGVCRTHGNVEM------
        + +KP+ V F+SV   CS + MVD G + F VM  D+ +EP  +HY+C+VD+LGRAGR++EA ++++ +P       A  SLLG  R H N+E+      
Subjt:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIG-PGVSALQSLLGVCRTHGNVEM------

Query:  ----------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEI
                               G W+K +EVR+ M+E+GV KE G SW++ G+       +H F +GD SHPQSE++
Subjt:  ----------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEI

Q84MA3 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial

7.4e-86

54.11

Show/hide

Query:  RSFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYES
        + F  A  E  PNEYTFG+V+NAI+  EDIS+K GQRCH+HL+K+GLN  P++S ALLDMYAKRG+I ES++VFNE S+++QF WT +I  Y+ HGD+E+
Subjt:  RSFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYES

Query:  VIKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGN
        V+ LF +M KE + PD V FLSVLT C+R  MVD G + F++MI+ + +EP  EHYSCMVDMLGRAGRL+EAEE++S +P GPG S LQS+LG CR HGN
Subjt:  VIKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGN

Query:  VEM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAK
        V+M                            K +W+K +E+RK MR++ V KE GFSW+DVG+   S L + GFSSGD SHP+S+EI+RM +
Subjt:  VEM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAK

Q9SVA5 Pentatricopeptide repeat-containing protein At4g39530

5.0e-42

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        +P+E+TF  +V A  AG   S++ GQ  H  L+K GL  +P I+ ALLDMYAK GS +++ + F+  + +    W  +I  YA HG+ +  +++ E+M  
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------
        E ++P+ + F+ VL+ CS   +V+ G + F++M++   IEPE EHY CMV +LGRAGRL +A E++  +P  P     +SLL  C   GNVE+       
Subjt:  EKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------

Query:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRM
                             KG W +  +VR+ M+  GV+KE G SW+ +      N  +H F S D SH ++ +I+ +
Subjt:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRM

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g27610

8.2e-45

34.53

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        KPNE+TF +++N + A  + S+  G++ H   IK  L+    +S ALL MYAK+G+I+ ++ VF    ++   +W  +I  YAQHG     + +F+EM+K
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------
         K+K D V F+ V   C+   +V+ G ++FD+M++D  I P  EH SCMVD+  RAG+LE+A +++  +P   G +  +++L  CR H   E+       
Subjt:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------

Query:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF
                              GDW++ ++VRK M ER V KE G+SW++V N        + F +GD SHP  ++I+
Subjt:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF

Arabidopsis top hits

e value

%identity

Alignment

AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein

5.9e-46

34.53

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        KPNE+TF +++N + A  + S+  G++ H   IK  L+    +S ALL MYAK+G+I+ ++ VF    ++   +W  +I  YAQHG     + +F+EM+K
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------
         K+K D V F+ V   C+   +V+ G ++FD+M++D  I P  EH SCMVD+  RAG+LE+A +++  +P   G +  +++L  CR H   E+       
Subjt:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------

Query:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF
                              GDW++ ++VRK M ER V KE G+SW++V N        + F +GD SHP  ++I+
Subjt:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF

AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.7e-43

32.85

Show/hide

Query:  YTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEKEKLK
        +TF ++++ ++     S++ G++ HS ++K+GL+ +  +  AL+ MY+K GSI  + RVFN    ++  +WT +I  +A+HG    V++ F +M +E +K
Subjt:  YTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEKEKLK

Query:  PDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-----------
        P+ V ++++L+ CS   +V  G + F+ M +DH I+P+ EHY+CMVD+L RAG L +A E ++ +P    V   ++ LG CR H N E+           
Subjt:  PDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-----------

Query:  -----------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF
                          G WE+ +E+R++M+ER ++KE G SW++VG+       +H F  GD +HP + +I+
Subjt:  -----------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIF

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein

8.5e-45

36.33

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        KPN  T  T++ + +A    +L  G+  H++ IK  L  D  +  AL+DMYAK G +Q S++VF++  +++   W V+I  Y  HG+ +  I L   M  
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIG-PGVSALQSLLGVCRTHGNVEM------
        + +KP+ V F+SV   CS + MVD G + F VM  D+ +EP  +HY+C+VD+LGRAGR++EA ++++ +P       A  SLLG  R H N+E+      
Subjt:  EKLKPDAVIFLSVL-TCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIG-PGVSALQSLLGVCRTHGNVEM------

Query:  ----------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEI
                               G W+K +EVR+ M+E+GV KE G SW++ G+       +H F +GD SHPQSE++
Subjt:  ----------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEI

AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein

5.2e-87

54.11

Show/hide

Query:  RSFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYES
        + F  A  E  PNEYTFG+V+NAI+  EDIS+K GQRCH+HL+K+GLN  P++S ALLDMYAKRG+I ES++VFNE S+++QF WT +I  Y+ HGD+E+
Subjt:  RSFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYES

Query:  VIKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGN
        V+ LF +M KE + PD V FLSVLT C+R  MVD G + F++MI+ + +EP  EHYSCMVDMLGRAGRL+EAEE++S +P GPG S LQS+LG CR HGN
Subjt:  VIKLFEEMEKEKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGN

Query:  VEM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAK
        V+M                            K +W+K +E+RK MR++ V KE GFSW+DVG+   S L + GFSSGD SHP+S+EI+RM +
Subjt:  VEM----------------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAK

AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.6e-43

Show/hide

Query:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK
        +P+E+TF  +V A  AG   S++ GQ  H  L+K GL  +P I+ ALLDMYAK GS +++ + F+  + +    W  +I  YA HG+ +  +++ E+M  
Subjt:  KPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQHGDYESVIKLFEEMEK

Query:  EKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------
        E ++P+ + F+ VL+ CS   +V+ G + F++M++   IEPE EHY CMV +LGRAGRL +A E++  +P  P     +SLL  C   GNVE+       
Subjt:  EKLKPDAVIFLSVLT-CSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEM-------

Query:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRM
                             KG W +  +VR+ M+  GV+KE G SW+ +      N  +H F S D SH ++ +I+ +
Subjt:  ---------------------KGDWEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGCTTTATGCCAAGAAGCTTTAGAGATGCCGTAATGGAATATAAGCCAAACGAATACACCTTTGGGACTGTCGTGAA
TGCAATCAGTGCCGGCGAAGACATATCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGATTAAACTTCGACCCTATAATTTCAGGTGCCCTCCTAG
ACATGTATGCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATGAAACATCCAAACAAAGTCAATTCGCTTGGACTGTGCTGATCTTTGACTACGCACAACAC
GGGGACTATGAGTCAGTGATAAAACTGTTTGAAGAAATGGAAAAGGAAAAGTTGAAGCCTGATGCAGTTATCTTCCTATCTGTCTTAACATGTAGCAGGAATAGAATGGT
CGACATGGGTTGTCAATTTTTCGACGTGATGATCAAAGATCATATGATTGAGCCAGAAGGAGAGCACTACTCCTGTATGGTTGATATGCTGGGGCGTGCAGGGCGATTGG
AAGAGGCCGAGGAAATTCTATCATGCATACCAATAGGGCCGGGAGTATCTGCATTACAGAGCTTGCTTGGAGTGTGTAGGACGCATGGGAATGTGGAGATGAAAGGAGAT
TGGGAAAAAGGTTCTGAAGTGAGGAAGGAGATGAGAGAAAGAGGAGTGATGAAAGAGATTGGATTCAGTTGGGTAGATGTTGGCAATTTTGGTGCTTCTAATTTATACTT
GCATGGCTTTTCATCTGGAGATGTATCTCACCCACAATCAGAAGAGATATTTAGAATGGCAAAATATATGGAGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MECLNFWVCSKCFMPRSFRDAVMEYKPNEYTFGTVVNAISAGEDISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTVLIFDYAQH
GDYESVIKLFEEMEKEKLKPDAVIFLSVLTCSRNRMVDMGCQFFDVMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILSCIPIGPGVSALQSLLGVCRTHGNVEMKGD
WEKGSEVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRMAKYME

Chy2G042590 (gene) of Cucumber (hystrix) v1 genome