; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G042980 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G042980
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationchrH02:24337954..24339289
RNA-Seq ExpressionChy2G042980
SyntenyChy2G042980
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]1.15e-8189.92Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQ+    L C   E
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]5.72e-9096.12Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQLHF ELRCPVEE
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]3.64e-9096.12Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPD+CCISPRF SNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQLHF ELRCP+EE
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]6.88e-6780Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSRIEP +PD+CCISPRFRSNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHF
        +D+KSRI+ FGIRDGD LHF
Subjt:  MDDKSRIQHFGIRDGDQLHF

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]3.98e-7488.14Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MSRIEP+VPD+CCISPRFRSNSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVAAVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQL
        +DDKSRI+HFGIRDGDQ+
Subjt:  MDDKSRIQHFGIRDGDQL

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein5.7e-6896.12Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS IEPIVPD+CCISPRF SNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQLHF ELRCP+EE
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X11.0e-6189.92Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQ+    L C   E
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X27.4e-6896.12Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQLHF ELRCPVEE
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X27.4e-6896.12Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPD+CCISPRF +NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE
        MDDKSRIQHFGIRDGDQLHF ELRCPVEE
Subjt:  MDDKSRIQHFGIRDGDQLHFEELRCPVEE

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like5.3e-5079.17Show/hide
Query:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL
        M RIEP +PD+CCISPRFRSNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKL

Query:  MDDKSRIQHFGIRDGDQLHF
        +D+KSRI+ FGIRDGD LHF
Subjt:  MDDKSRIQHFGIRDGDQLHF

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein5.0e-0529.55Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein2.8e-1142.35Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein3.8e-0529.55Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein2.9e-0529.55Show/hide
Query:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+ +++ +GIR+ D++ F
Subjt:  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein2.7e-2247.86Show/hide
Query:  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD
        I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++ AVE VF    +      ISW HVWGHFCLCY+  +L++D
Subjt:  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDD

Query:  KSRIQHFGIRDGDQLHF
        K+ I++ G+ DGDQLHF
Subjt:  KSRIQHFGIRDGDQLHF

AT3G07860.1 Ubiquitin-like superfamily protein2.0e-1242.35Show/hide
Query:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F
Subjt:  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

AT4G32270.1 Ubiquitin-like superfamily protein7.2e-2349.48Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

AT4G32270.2 Ubiquitin-like superfamily protein2.0e-1747.19Show/hide
Query:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
        +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F
Subjt:  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF

AT5G25340.1 Ubiquitin-like superfamily protein3.9e-2147.96Show/hide
Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFE
        RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    ISW HVWGHFCLC+   KL+ D   I ++G++DGD++ F+
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGCATTGAACCCATTGTCCCCGATGCTTGCTGTATTTCTCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCT
CCGACTCTCCGTCTTGAAATTGGACGGCTCTTCTTTTGAGGTGCAAGTTGAAAGGACAGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTT
GGAATTCGTGATGGTGATCAGCTGCATTTTGAGGAATTGAGATGTCCCGTAGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGCATTGAACCCATTGTCCCCGATGCTTGCTGTATTTCTCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCCCAGCTCCT
CCGACTCTCCGTCTTGAAATTGGACGGCTCTTCTTTTGAGGTGCAAGTTGAAAGGACAGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTT
GGAATTCGTGATGGTGATCAGCTGCATTTTGAGGAATTGAGATGTCCCGTAGAAGAATAA
Protein sequenceShow/hide protein sequence
MSRIEPIVPDACCISPRFRSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHF
GIRDGDQLHFEELRCPVEE