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Chy2G043330 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G043330
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchrH02:24931539..24931719
RNA-Seq ExpressionChy2G043330
SyntenyChy2G043330
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033502.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.60e-2581.67Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIE FDGNGDFT WT+  T I GSQK LKALEDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
KAA0042267.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.87e-2383.33Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTT K+EIE FDGNGD TLWTK  T ILGSQKALKAL+DPKELPATL KSERETME VAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.27e-2588.33Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIE FDGNGDFTLWTK  T ILGSQKALKALEDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
KAA0054988.1 hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa]9.88e-2485Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIENFDGN DFT WTK  T ILGSQKALKA EDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
TYK14225.1 putative polyprotein [Cucumis melo var. makuwa]3.23e-2383.33Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTT K+EIE FDGNGD TLWTK  T ILGSQKALKAL+DPKELPATL KSERETME VAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
TrEMBL top hitse value%identityAlignment
A0A5A7TKQ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-1883.33Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTT K+EIE FDGNGD TLWTK  T ILGSQKALKAL+DPKELPATL KSERETME VAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-949.3e-2188.33Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIE FDGNGDFTLWTK  T ILGSQKALKALEDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
A0A5A7UJ23 Integrase catalytic domain-containing protein3.9e-1985Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIENFDGN DFT WTK  T ILGSQKALKA EDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
A0A5D3DST2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.7e-1981.67Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIE FDGNGDFT WT+  T I GSQK LKALEDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-1885Show/hide
Query:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
        MTTTK+EIE FDGNGDFTL TK  T  LGSQKALKALEDPKELPATL KSERET+EEVAY
Subjt:  MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTACGAAGTATGAAATTGAAAATTTTGATGGGAATGGAGACTTTACCTTGTGGACAAAAACATTTACTGTAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTT
GGAAGACCCAAAAGAACTCCCTGCAACTTTGGCCAAGTCAGAAAGAGAAACAATGGAAGAGGTAGCTTACG
mRNA sequenceShow/hide mRNA sequence
ATGACTACTACGAAGTATGAAATTGAAAATTTTGATGGGAATGGAGACTTTACCTTGTGGACAAAAACATTTACTGTAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTT
GGAAGACCCAAAAGAACTCCCTGCAACTTTGGCCAAGTCAGAAAGAGAAACAATGGAAGAGGTAGCTTACG
Protein sequenceShow/hide protein sequence
MTTTKYEIENFDGNGDFTLWTKTFTVILGSQKALKALEDPKELPATLAKSERETMEEVAYX