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Chy2G043780 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G043780
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchrH02:25447672..25457092
RNA-Seq ExpressionChy2G043780
SyntenyChy2G043780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058547.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]2.79e-11678.97Show/hide
Query:  IKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVL
        +++WDSKNHQIITWL NTSI A+H QFDAF +AKEL DFL TRFKSIGLAHYYQLH+ LVNL+Q+ G+ VNEYL VLQPIWTQLDQA ISKDHLRLIKVL
Subjt:  IKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVL

Query:  MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLR
        MGLRPEYESVRAALLHR+PLPSLDA IQEILFEEKRLGIN +K SDVVLAST++P  AS+TFCKN KL+GHKFIDCPKIECRYCH+ GHILDNCP +P R
Subjt:  MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLR

Query:  PSGSSTKEKNSSKP
        P    T+ KN +KP
Subjt:  PSGSSTKEKNSSKP

TYK29664.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]8.00e-12078.97Show/hide
Query:  IKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVL
        +++WDSKNHQIITWL NTSI A+H QFDAF +AKEL +FLSTRFKS+GL HYYQLH++LVNL+QD G+ VNEYL VLQPIWTQLDQA+ISKDHLRLIKVL
Subjt:  IKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVL

Query:  MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLR
        MGL PEYESVRAALLHRSPLPSLDAAIQEILFEE+RLGIN +K SD VLAST++P  AS+TFCKNCKL+GHKFI+CPKIECRYCH+ GHILDNCP +P R
Subjt:  MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLR

Query:  PSGSSTKEKNSSKP
        P   STK KN +KP
Subjt:  PSGSSTKEKNSSKP

XP_008449924.1 PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]9.42e-12279.17Show/hide
Query:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV
        ++++WD+KNHQIITWL NTSI A+H QFDAF  AKEL DFLSTRFKS+ LAHYYQLH+ LVNL+Q+ G+ VNEYL VLQPIWTQLDQA+ISKDHLRLIKV
Subjt:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV

Query:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL
        LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGIN +  SDVVLAST++P  AS+TFCKNCKL+GHKFIDCPKIEC+YCH+ GHILDNCP +PL
Subjt:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL

Query:  RPSGSSTKEKNSSKPG
        RP   ST+ KN +KPG
Subjt:  RPSGSSTKEKNSSKPG

XP_016901980.1 PREDICTED: uncharacterized protein LOC107991495 [Cucumis melo]5.95e-11681.19Show/hide
Query:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV
        ++++WDSKNHQIITWL NTSI A+H QFDAF  AKEL DFLSTRFKS+GLAHYYQLH+ LVNL+Q+ G+ VNEYL VLQPIWTQLDQA+ISKDHLRLIKV
Subjt:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV

Query:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL
        LMGL PEYESVRAALLHRSPL SLDAAIQEILFEEKRL IN +K SDVVLAST++P  AS+TFCKNCKL+GHKFIDCPKIECRYCH+ GHILDNCP +P 
Subjt:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL

Query:  RP
        RP
Subjt:  RP

XP_031740126.1 uncharacterized protein LOC116403359 [Cucumis sativus]1.62e-13085.65Show/hide
Query:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV
        +++DWDSKNHQIITWLGNTSI A+HAQFDAF+DAK L DFLSTRFKSIGLAHYYQLHSTLVNL+QD+G+ VNEYL VLQPIWTQLDQA+ISKDHLRLIKV
Subjt:  KIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKV

Query:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL
        LMGLRPEYESVRAALLHR+PLPSLDAAIQEILFEEKRLGINS KQSDVVLAST+TPNRA+N FCKNCKLSGHKF +CPKIECRYCH+ GHILDNCPTRP 
Subjt:  LMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPL

Query:  RPSGSSTKEKNSSKPG
        RP  +STKEK  +K G
Subjt:  RPSGSSTKEKNSSKPG

TrEMBL top hitse value%identityAlignment
A0A1S3BN45 uncharacterized protein LOC1034916541.2e-9575Show/hide
Query:  LSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQP
        L+KQ K    K I       ++++WD+KNHQIITWL NTSI A+H QFDAF  AKEL DFLSTRFKS+ LAHYYQLH+ LVNL+Q+ G+ VNEYL VLQP
Subjt:  LSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQP

Query:  IWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKI
        IWTQLDQA+ISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGIN +  SDVVLAST++P  AS+TFCKNCKL+GHKFIDCPKI
Subjt:  IWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKI

Query:  ECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKPG
        EC+YCH+ GHILDNCP +PLRP   ST+ KN +KPG
Subjt:  ECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKPG

A0A5A7UGZ4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-9572.54Show/hide
Query:  KFW-ILSMILSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFV
        K W I++  ++K TK   + K  +S    ++++WDSKNHQIITWL NTSI A+H QFDAF++AKEL DFLSTRFKS+GLAHYYQLH++LVNL+Q+ G+ V
Subjt:  KFW-ILSMILSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFV

Query:  NEYLTVLQPIWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSG
        NEYL VLQPIWTQLDQA+ISKDHLRLIKVLMGLRPEYESV+AALLHRSPLPSLDAAIQEILFEE+RLGIN +K SDVVLAST++P  AS+TFCKNCKL+G
Subjt:  NEYLTVLQPIWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSG

Query:  HKFIDCPKIECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKP
        HKFI+CPKIECRYCH+ GHILDNCP +P +P   ST+ KN +KP
Subjt:  HKFIDCPKIECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKP

A0A5A7UNP5 Putative mitochondrial protein1.2e-9575Show/hide
Query:  LSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQP
        L+KQ K    K I       ++++WD+KNHQIITWL NTSI A+H QFDAF  AKEL DFLSTRFKS+ LAHYYQLH+ LVNL+Q+ G+ VNEYL VLQP
Subjt:  LSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQP

Query:  IWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKI
        IWTQLDQA+ISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGIN +  SDVVLAST++P  AS+TFCKNCKL+GHKFIDCPKI
Subjt:  IWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKI

Query:  ECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKPG
        EC+YCH+ GHILDNCP +PLRP   ST+ KN +KPG
Subjt:  ECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKPG

A0A5D3CT53 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-9572.54Show/hide
Query:  KFW-ILSMILSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFV
        K W I++  ++K TK   + K  +S    ++++WDSKNHQIITWL NTSI A+H QFDAF++AKEL +FLSTRFKS+GLAHYYQLH++LVNL+Q+ G+ V
Subjt:  KFW-ILSMILSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFV

Query:  NEYLTVLQPIWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSG
        NEYL VLQPIWTQLDQA+ISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEE+RLGIN +K SDVVLAST++P  AS+TFCKNCKL+G
Subjt:  NEYLTVLQPIWTQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSG

Query:  HKFIDCPKIECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKP
        HKFI+CPKIECRYCH+ GHILDNCP +P +P   ST+ KN +KP
Subjt:  HKFIDCPKIECRYCHERGHILDNCPTRPLRPSGSSTKEKNSSKP

A0A5D3DIH5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-9580.28Show/hide
Query:  KDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVLM
        ++WDSKNHQIITWL NTSI A+H QFDAF  AKEL DFLSTRFKS+GLAHYYQLH+ LVNL+Q+ G+ VNEYL VLQPIWTQLDQA+ISKDHLRLIKVLM
Subjt:  KDWDSKNHQIITWLGNTSILALHAQFDAFNDAKEL*DFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIWTQLDQASISKDHLRLIKVLM

Query:  GLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLRP
        GLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGIN +K SDVVLAST++P  AS+TFCKNCKL+GHKFIDCPKIECRYCH+ GHILDNCP +P +P
Subjt:  GLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHILDNCPTRPLRP

Query:  SGSSTKEKNSSKP
           ST+ K  +KP
Subjt:  SGSSTKEKNSSKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAAAATTTTGGATTTTATCCATGATATTGTCCAAACAGACCAAGACAAGGACAAGGAAGAAGATAGCAAATTCATTGAACGCCTTAAAGATTAAAGATTGGGACAGTAA
GAATCATCAAATTATCACCTGGCTTGGTAACACTTCTATTCTTGCTCTACATGCACAATTTGATGCTTTTAATGATGCTAAAGAATTATGAGATTTTTTGTCTACACGCT
TTAAATCTATTGGATTAGCGCATTACTATCAACTGCACAGTACACTAGTAAATCTTCATCAAGATACTGGTAAGTTTGTCAATGAATATTTGACAGTTCTTCAACCCATT
TGGACTCAGCTGGATCAAGCTAGCATTAGCAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGATTACGCCCAGAATATGAATCTGTTAGGGCTGCCTTGCTACACCG
AAGTCCATTGCCCTCATTGGATGCTGCTATCCAAGAAATCTTGTTTGAAGAAAAGCGCCTTGGCATTAATTCTGCTAAACAATCTGATGTTGTCCTTGCCAGCACTCATA
CGCCCAATAGAGCATCAAATACCTTTTGTAAGAACTGTAAGCTCTCTGGTCACAAGTTTATTGATTGCCCTAAAATAGAGTGCAGGTACTGTCACGAACGTGGTCATATT
CTGGATAATTGTCCTACCAGACCACTCCGACCTTCTGGCTCTTCTACAAAAGAGAAAAACTCTTCTAAACCTGGTA
mRNA sequenceShow/hide mRNA sequence
ACAAAATTTTGGATTTTATCCATGATATTGTCCAAACAGACCAAGACAAGGACAAGGAAGAAGATAGCAAATTCATTGAACGCCTTAAAGATTAAAGATTGGGACAGTAA
GAATCATCAAATTATCACCTGGCTTGGTAACACTTCTATTCTTGCTCTACATGCACAATTTGATGCTTTTAATGATGCTAAAGAATTATGAGATTTTTTGTCTACACGCT
TTAAATCTATTGGATTAGCGCATTACTATCAACTGCACAGTACACTAGTAAATCTTCATCAAGATACTGGTAAGTTTGTCAATGAATATTTGACAGTTCTTCAACCCATT
TGGACTCAGCTGGATCAAGCTAGCATTAGCAAAGATCATCTTCGTCTTATTAAAGTCCTTATGGGATTACGCCCAGAATATGAATCTGTTAGGGCTGCCTTGCTACACCG
AAGTCCATTGCCCTCATTGGATGCTGCTATCCAAGAAATCTTGTTTGAAGAAAAGCGCCTTGGCATTAATTCTGCTAAACAATCTGATGTTGTCCTTGCCAGCACTCATA
CGCCCAATAGAGCATCAAATACCTTTTGTAAGAACTGTAAGCTCTCTGGTCACAAGTTTATTGATTGCCCTAAAATAGAGTGCAGGTACTGTCACGAACGTGGTCATATT
CTGGATAATTGTCCTACCAGACCACTCCGACCTTCTGGCTCTTCTACAAAAGAGAAAAACTCTTCTAAACCTGGTA
Protein sequenceShow/hide protein sequence
TKFWILSMILSKQTKTRTRKKIANSLNALKIKDWDSKNHQIITWLGNTSILALHAQFDAFNDAKELDFLSTRFKSIGLAHYYQLHSTLVNLHQDTGKFVNEYLTVLQPIW
TQLDQASISKDHLRLIKVLMGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINSAKQSDVVLASTHTPNRASNTFCKNCKLSGHKFIDCPKIECRYCHERGHIL
DNCPTRPLRPSGSSTKEKNSSKPGX