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Chy2G044150 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G044150
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchrH02:25704047..25704529
RNA-Seq ExpressionChy2G044150
SyntenyChy2G044150
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]1.33e-7794.44Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL
        MAMVDS FIFIGFS VPHPL NNNNGRKFGITSAKRTQDSDSDS SSTQPNQFKFPSLRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LL
Subjt:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL

Query:  KIGALLVVPFCVFLVFSFSKFDSDSS
        KIGALLVVPFCVFLVFSFSK+DSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKFDSDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]1.05e-7291.47Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLFNNN---NGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDS FIFIG S+VPHPL NNN   NGRKFGITSAKRTQDS  DSTSSTQPNQFKFPSLRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSGFIFIGFSSVPHPLFNNN---NGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGALLVVPFCVFLVFSFSKFDSDSS
        ELLKIGA LVVPFCVFLVFSFSKFDSDSS
Subjt:  ELLKIGALLVVPFCVFLVFSFSKFDSDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]9.72e-5474.02Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DS FIF G S++PHPL  +NNN RKFG TSAKRT DSDS S++     Q KFPSLRV+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGALLVVPFCVFLVFSFSKFDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKFDSDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]1.88e-5677.17Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DS FIF G S++PHPL  +NNN RKFG TSAKRT DSDSDS SSTQ    KFPSLRV+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGALLVVPFCVFLVFSFSKFDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKFDSDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]5.60e-6181.75Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL
        MAMV+S FIFIG S+VP+PL NNN+ RKF ITSAK T+DSDSDS SS    Q KFPSLRVS PLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+EELL
Subjt:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL

Query:  KIGALLVVPFCVFLVFSFSKFDSDSS
        KIGA LVVPFCVFLVFSFS+ DSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKFDSDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein1.4e-5894.44Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL
        MAMVDS FIFIGFS VPHPL NNNNGRKFGITSAKRTQDSDSDS SSTQPNQFKFPSLRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LL
Subjt:  MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELL

Query:  KIGALLVVPFCVFLVFSFSKFDSDSS
        KIGALLVVPFCVFLVFSFSK+DSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKFDSDSS

A0A1S3B903 uncharacterized protein LOC1034873299.2e-5591.47Show/hide
Query:  MAMVDSGFIFIGFSSVPHPLFN---NNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDS FIFIG S+VPHPL N   NNNGRKFGITSAKRTQ  DSDSTSSTQPNQFKFPSLRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSGFIFIGFSSVPHPLFN---NNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGALLVVPFCVFLVFSFSKFDSDSS
        ELLKIGA LVVPFCVFLVFSFSKFDSDSS
Subjt:  ELLKIGALLVVPFCVFLVFSFSKFDSDSS

A0A6J1C0R6 uncharacterized protein LOC1110073014.7e-3570.16Show/hide
Query:  MVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKI
        M DS FIF G S+V   LFN NN R F    AKRT   DS +T S Q NQF+FPSLRV  PL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKI
Subjt:  MVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKI

Query:  GALLVVPFCVFLVFSFSKFDSDSS
        GA LVVPFCVFL+ SF+K  +DSS
Subjt:  GALLVVPFCVFLVFSFSKFDSDSS

A0A6J1EZT4 uncharacterized protein LOC1114408612.2e-4075.59Show/hide
Query:  MAMVDSGFIFIGFSSVPHP-LFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DS FIF G S++PHP L +NNN RKFG TSAKRT   DSDS SST   Q KFPSLRV+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MAMVDSGFIFIGFSSVPHP-LFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGALLVVPFCVFLVFSFSKFDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKFDSDSS

A0A6J1KT82 uncharacterized protein LOC1114980162.9e-4075.59Show/hide
Query:  MAMVDSGFIFIGFSSVPHPL-FNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL
        M + DS FIF G S++PHPL  +NNN RKFG TSAKRT   DSDS SST   Q KFPSLRVS PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ 
Subjt:  MAMVDSGFIFIGFSSVPHPL-FNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEEL

Query:  LKIGALLVVPFCVFLVFSFSKFDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKFDSDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein1.5e-2050.47Show/hide
Query:  NNNNGRKF--GITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYP--LLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFS
        N+N  R F  G+T   + +D    S           P LR+  P  ++ARS ++VL LGF+DAGYSGDWSRIG I+KETEELLKI A LVVP C+FL  S
Subjt:  NNNNGRKF--GITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYP--LLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFS

Query:  FSKFDSD
        FS   +D
Subjt:  FSKFDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGTAGATTCAGGTTTTATCTTCATCGGTTTCTCCTCCGTACCTCATCCCCTTTTCAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTAC
ACAAGACTCCGATTCGGATTCCACTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCATATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCG
GATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTT
TGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCAGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGGTAGATTCAGGTTTTATCTTCATCGGTTTCTCCTCCGTACCTCATCCCCTTTTCAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTAC
ACAAGACTCCGATTCGGATTCCACTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCATATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCG
GATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTT
TGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCAGATTCTTCGTAA
Protein sequenceShow/hide protein sequence
MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPF
CVFLVFSFSKFDSDSS