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Chy2G044530 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G044530
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationchrH02:26047942..26051535
RNA-Seq ExpressionChy2G044530
SyntenyChy2G044530
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063999.1 small nuclear ribonucleoprotein E-like [Cucumis melo var. makuwa]4.05e-4467.18Show/hide
Query:  SKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG---NHEGEGEADKR-----------QTSISRLLVIKG---NLSTRVWEERL
         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG   +H  E   + +            T+   +L +K        RVWEERL
Subjt:  SKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG---NHEGEGEADKR-----------QTSISRLLVIKG---NLSTRVWEERL

Query:  DYERSQEKVVVAGGTHMGSGNHALLARLAIV
        DYERSQEKVVVAGGTH+GSGNH LLARL IV
Subjt:  DYERSQEKVVVAGGTHMGSGNHALLARLAIV

KAE8653153.1 hypothetical protein Csa_019571 [Cucumis sativus]1.87e-8688.54Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG--------------NHEGEGEADKRQTSI
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG              + +GEGEADKRQTSI
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG--------------NHEGEGEADKRQTSI

Query:  SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLAIVFCLQLAI
        SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARL IVFCLQLAI
Subjt:  SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLAIVFCLQLAI

XP_004146294.1 small nuclear ribonucleoprotein E [Cucumis sativus]9.77e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

XP_008453647.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo]9.77e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

XP_022921760.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata]9.77e-40100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

TrEMBL top hitse value%identityAlignment
A0A0A0LUF2 Small nuclear ribonucleoprotein E2.0e-29100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

A0A1S3BXJ8 Small nuclear ribonucleoprotein E2.0e-29100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

A0A5A7VEN8 Small nuclear ribonucleoprotein E3.5e-3467.69Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG---NHEGEGEADKR-----------QTSISRLLVIKG---NLSTRVWEERLD
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG   +H  E   + +            T+   +L +K        RVWEERLD
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG---NHEGEGEADKR-----------QTSISRLLVIKG---NLSTRVWEERLD

Query:  YERSQEKVVVAGGTHMGSGNHALLARLAIV
        YERSQEKVVVAGGTH+GSGNH LLARL IV
Subjt:  YERSQEKVVVAGGTHMGSGNHALLARLAIV

A0A6J1E6Q3 Small nuclear ribonucleoprotein E2.0e-29100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

A0A6J1JLU4 Small nuclear ribonucleoprotein E2.0e-29100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E1.9e-2171.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

A4FUI2 Small nuclear ribonucleoprotein E1.9e-2171.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

P62303 Small nuclear ribonucleoprotein E1.9e-2171.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

P62304 Small nuclear ribonucleoprotein E1.9e-2171.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

P62305 Small nuclear ribonucleoprotein E1.9e-2171.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.5e-2988.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.5e-2984.21Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGNHEGE
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG +  E
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGNHEGE

AT4G30330.1 Small nuclear ribonucleoprotein family protein3.9e-3090.14Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACCTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
GAGGATTGAGGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGCAATCATG
AAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGC
CAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTTAGCCATTGTCTTCTGCTTGCAACTGGCAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACCTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
GAGGATTGAGGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGCAATCATG
AAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGC
CAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTTAGCCATTGTCTTCTGCTTGCAACTGGCAATATGA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGNHEGEGEADKRQTSISRLLVIKGNLSTRVWEERLDYERS
QEKVVVAGGTHMGSGNHALLARLAIVFCLQLAI