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Chy2G044650 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G044650
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionLPS-induced tumor necrosis factor alpha factor
Genome locationchrH02:26147644..26148941
RNA-Seq ExpressionChy2G044650
SyntenyChy2G044650
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054811.1 hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa]1.42e-0866.04Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM + TV TSVTG +
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

KAA0068093.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa]5.98e-0668.89Show/hide
Query:  KMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        + +ADCAP VAT   VVMT AP+LTPVVAPVM AATV TS+TG +
Subjt:  KMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

KGN65426.1 hypothetical protein Csa_019847 [Cucumis sativus]2.73e-1483.02Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGD GLALK+ ADCAPAVATA  VVMT AP L PVVAPVMVAATVVTSVTG L
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

TYJ99647.1 hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa]5.01e-0967.92Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM A TV TSVTG +
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

TYK09492.1 hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa]1.33e-1177.36Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        M DV  ALKM ADCAPAVAT   VVMT AP+LTPVVAPVMVAA VVTSVT  L
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

TrEMBL top hitse value%identityAlignment
A0A0A0LZP7 Uncharacterized protein7.1e-1083.02Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGD GLALK+ ADCAPAVATA  VVMT AP L PVVAPVMVAATVVTSVTG L
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

A0A5A7UMM6 Uncharacterized protein2.4e-0566.04Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM + TV TSVTG +
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

A0A5D3BKI7 Uncharacterized protein1.1e-0567.92Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        MGDV   LKM  DCA AVA    VVMT AP+LTPVVAPVM A TV TSVTG +
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

A0A5D3CE01 Uncharacterized protein1.1e-0777.36Show/hide
Query:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        M DV  ALKM ADCAPAVAT   VVMT AP+LTPVVAPVMVAA VVTSVT  L
Subjt:  MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

A0A5D3DRF6 LPS-induced tumor necrosis factor alpha factor4.4e-0472.09Show/hide
Query:  VADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL
        +ADCAP VAT   VVMT AP+LTPVVAPVM AATV TS+TG +
Subjt:  VADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATGTTGGGCTTGCTTTGAAGATGGTGGCTGATTGTGCTCCGGCAGTTGCGACGGCTTTATATGTGGTTATGACGGCTGCACCAGTGCTGACCCCTGTTGTAGC
CCCTGTTATGGTTGCAGCTACCGTTGTTACGTCGGTCACCGGCACATTGAATAGACCATTTTCCTCCAAATTGAAATTAAAGTTGGGATACAAAATTGAAGAAAACAATA
AAATTGAAGATTTCAGAATCCAAAGTTCATTGGATTCTTTTGGAAACGAAAATAAATCGCCGCTATTAAGTAATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATGTTGGGCTTGCTTTGAAGATGGTGGCTGATTGTGCTCCGGCAGTTGCGACGGCTTTATATGTGGTTATGACGGCTGCACCAGTGCTGACCCCTGTTGTAGC
CCCTGTTATGGTTGCAGCTACCGTTGTTACGTCGGTCACCGGCACATTGAATAGACCATTTTCCTCCAAATTGAAATTAAAGTTGGGATACAAAATTGAAGAAAACAATA
AAATTGAAGATTTCAGAATCCAAAGTTCATTGGATTCTTTTGGAAACGAAAATAAATCGCCGCTATTAAGTAATATATAA
Protein sequenceShow/hide protein sequence
MGDVGLALKMVADCAPAVATALYVVMTAAPVLTPVVAPVMVAATVVTSVTGTLNRPFSSKLKLKLGYKIEENNKIEDFRIQSSLDSFGNENKSPLLSNI