CuGenDBv2

Gene ID	Chy2G045110
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Isocitrate dehydrogenase [NADP]
Genome location	chrH02:26554908..26555090
RNA-Seq Expression	Chy2G045110
Synteny	Chy2G045110
Gene Ontology terms	GO:0006099 - tricarboxylic acid cycle (biological process) GO:0006102 - isocitrate metabolic process (biological process) GO:0043229 - intracellular organelle (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004450 - isocitrate dehydrogenase (NADP+) activity (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR004790 - Isocitrate dehydrogenase NADP-dependent

Homology

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GenBank top hits

e value

%identity

Alignment

KAG1367693.1 putative Isocitrate dehydrogenase [NADP] [Cocos nucifera]

3.60e-26

79.31

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ
        +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYRA TDTVI+ PGKLK VFEG+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ

KAG6579052.1 Cytosolic isocitrate dehydrogenase [NADP], partial [Cucurbita argyrosperma subsp. sororia]

3.84e-26

83.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVI+ PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

NP_001295854.1 cytosolic isocitrate dehydrogenase [Cucumis sativus]

1.42e-26

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

XP_011655148.1 cytosolic isocitrate dehydrogenase isoform X2 [Cucumis sativus]

1.42e-26

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

XP_031740810.1 cytosolic isocitrate dehydrogenase isoform X1 [Cucumis sativus]

1.46e-26

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYRA TDTVIR PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRB4 Isocitrate dehydrogenase [NADP]

1.1e-21

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVIR PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

A0A1S4E429 Isocitrate dehydrogenase [NADP]

2.4e-21

83.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

A0A5A7VEU1 Isocitrate dehydrogenase [NADP]

2.4e-21

83.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

A0A6J1FJA0 Isocitrate dehydrogenase [NADP]

2.4e-21

83.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVI+ PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

Q8RW69 Isocitrate dehydrogenase [NADP]

1.1e-21

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPIL +NVPRLVPGWTKPICIGRHAFGDQYR ATDTVIR PGKLK VFEGQ T
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

SwissProt top hits

e value

%identity

Alignment

P50217 Isocitrate dehydrogenase [NADP]

5.2e-21

73.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYR ATDTVI+  GKLK VF  +G+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

P50218 Isocitrate dehydrogenase [NADP]

2.3e-21

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPI+ +N+PRLVPGWTKPICIGRHAFGDQYR ATDTVI+  GKLK VF  +GT
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)

8.1e-22

75.41

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF--EGQG
        +NG VF+EPI+ +N+PRL+PGWTKPICIGRHAFGDQYR ATD+VI+ PGKLK VF  EGQG
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF--EGQG

Q9SLK0 Peroxisomal isocitrate dehydrogenase [NADP]

6.2e-22

73.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPI+ RN+PRLVPGWTKPICIGRHAFGDQYR ATD ++  PGKLK VFE  G+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

Q9SRZ6 Cytosolic isocitrate dehydrogenase [NADP]

8.9e-21

74.14

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ
        +NG VF+EPI+ +NVP+LVPGWTKPICIGRHAFGDQYR ATD VI+ PGKL   FEG+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G54340.1 isocitrate dehydrogenase

4.4e-23

73.33

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT
        +NG VF+EPI+ RN+PRLVPGWTKPICIGRHAFGDQYR ATD ++  PGKLK VFE  G+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase

6.3e-22

74.14

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ
        +NG VF+EPI+ +NVP+LVPGWTKPICIGRHAFGDQYR ATD VI+ PGKL   FEG+
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQ

AT5G14590.1 Isocitrate/isopropylmalate dehydrogenase family protein

9.1e-21

76.36

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Query:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF
        ++G VF+EPI+  N+PRLVPGW KPICIGRHAFGDQYR ATDTVI+ PGKLK VF
Subjt:  MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVF

Sequences

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CDS sequence

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ATGAATGGTATTGTCTTCAAAGAACCGATTCTTCGCAGAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATTTGTATTGGAAGACATGCTTTTGGTGATCAATA
CAGAGCTGCTACTGATACAGTCATCAGACGACCTGGGAAATTGAAATTTGTTTTTGAGGGGCAGGGGACGTAA

mRNA sequence

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ATGAATGGTATTGTCTTCAAAGAACCGATTCTTCGCAGAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATTTGTATTGGAAGACATGCTTTTGGTGATCAATA
CAGAGCTGCTACTGATACAGTCATCAGACGACCTGGGAAATTGAAATTTGTTTTTGAGGGGCAGGGGACGTAA

Protein sequence

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MNGIVFKEPILRRNVPRLVPGWTKPICIGRHAFGDQYRAATDTVIRRPGKLKFVFEGQGT

Chy2G045110 (gene) of Cucumber (hystrix) v1 genome