; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G046450 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G046450
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description40S ribosomal protein S28
Genome locationchrH02:27598373..27602140
RNA-Seq ExpressionChy2G046450
SyntenyChy2G046450
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0019856 - pyrimidine nucleobase biosynthetic process (biological process)
GO:0044205 - 'de novo' UMP biosynthetic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004151 - dihydroorotase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1866844.1 hypothetical protein Lal_00018230 [Lupinus albus]7.34e-7492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
        MES +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREARR  MES +KHA+VVKVMGRTGSRGQVTQVRVKF+DDQN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN

Query:  RYIMRNVKGPVREGDILTLLESEREARRLR
        R IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RYIMRNVKGPVREGDILTLLESEREARRLR

KAF4386483.1 hypothetical protein G4B88_006739 [Cannabis sativa]1.79e-7092.13Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
        M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARR +M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN

Query:  RYIMRNVKGPVREGDILTLLESEREAR
        R+IMRNVKGPVREGDILTLLESEREAR
Subjt:  RYIMRNVKGPVREGDILTLLESEREAR

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]5.80e-83100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN

Query:  RYIMRNVKGPVREGDILTLLESEREARRLR
        RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RYIMRNVKGPVREGDILTLLESEREARRLR

MBC9846572.1 hypothetical protein [Adiantum capillus-veneris]2.46e-5471.22Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE----GDILTLLESEREARRLRM-----ESQIKHAVVVKVMGRTGSRGQVTQV
        M+S +K A+VVKVMGRTGSRGQVTQVRVKF+DDQNR IMRNVKGPVRE      ++    S+     L +     +S +K A+VVKVMGRTGSRGQVTQV
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE----GDILTLLESEREARRLRM-----ESQIKHAVVVKVMGRTGSRGQVTQV

Query:  RVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        RVKF+DDQNR IMRNVKGPVREGDIL LLESEREARRLR
Subjt:  RVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

THU74056.1 hypothetical protein C4D60_Mb04t29330 [Musa balbisiana]9.06e-5894.17Show/hide
Query:  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        VKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLRM++Q K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREAR
Subjt:  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Query:  RLR
        RLR
Subjt:  RLR

TrEMBL top hitse value%identityAlignment
A0A4S8KFH7 Uncharacterized protein9.8e-4494.17Show/hide
Query:  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        VKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLRM++Q K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREAR
Subjt:  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Query:  RLR
        RLR
Subjt:  RLR

A0A6A5LWQ7 Uncharacterized protein1.7e-5692.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
        MES +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREAR  RMES +KHA+VVKVMGRTGSRGQVTQVRVKF+DDQN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN

Query:  RYIMRNVKGPVREGDILTLLESEREARRLR
        R IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  RYIMRNVKGPVREGDILTLLESEREARRLR

A0A7J6GU77 Dihydroorotase3.5e-5792.13Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN
        M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARR +M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQN
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQN

Query:  RYIMRNVKGPVREGDILTLLESEREAR
        R+IMRNVKGPVREGDILTLLESEREAR
Subjt:  RYIMRNVKGPVREGDILTLLESEREAR

A0A7N0V8G3 Uncharacterized protein2.2e-2778.26Show/hide
Query:  GPVR---EGDILTLLESEREAR--RLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GP R   E D  ++L S R ++  R+RM+SQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GPVR---EGDILTLLESEREAR--RLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

F6HLE9 Uncharacterized protein2.3e-5370.93Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR-----------------------------------
        M++ +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR                                   
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR-----------------------------------

Query:  -------MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
               MES +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  -------MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-28.3e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S281.3e-2490.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S281.6e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S281.6e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-12.2e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.6e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.6e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S285.9e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTA
CATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGAATGGAATCCCAAATCAAGCATGCTG
TTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCA
GTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTA
CATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGAATGGAATCCCAAATCAAGCATGCTG
TTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCA
GTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG
Protein sequenceShow/hide protein sequence
MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
VREGDILTLLESEREARRLR