CuGenDBv2

Gene ID	Chy2G047280
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA annealing helicase and endonuclease ZRANB3
Genome location	chrH02:28196898..28197654
RNA-Seq Expression	Chy2G047280
Synteny	Chy2G047280
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0031297 - replication fork processing (biological process) GO:0048478 - replication fork protection (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0043596 - nuclear replication fork (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004386 - helicase activity (molecular function) GO:0004520 - endodeoxyribonuclease activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008453234.1 PREDICTED: DNA annealing helicase and endonuclease ZRANB3 isoform X1 [Cucumis melo]

1.01e-46

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGL+DLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

XP_008453235.1 PREDICTED: DNA annealing helicase and endonuclease ZRANB3 isoform X2 [Cucumis melo]

9.57e-47

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGL+DLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

XP_011660248.1 DNA annealing helicase and endonuclease ZRANB3 isoform X1 [Cucumis sativus]

2.91e-47

92.55

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGLMDLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

XP_011660254.1 DNA annealing helicase and endonuclease ZRANB3 isoform X3 [Cucumis sativus]

2.76e-47

92.55

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGLMDLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

XP_038880758.1 DNA annealing helicase and endonuclease ZRANB3-like isoform X2 [Benincasa hispida]

9.41e-47

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLS+ ELGIA+LSGF EWFSIH IISESDGLMDLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPG8 Uncharacterized protein

6.2e-40

92.55

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGLMDLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

A0A1S3BV63 DNA annealing helicase and endonuclease ZRANB3 isoform X1

1.8e-39

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGL+DLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

A0A1S3BVS1 DNA annealing helicase and endonuclease ZRANB3 isoform X2

1.8e-39

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGL+DLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

A0A5A7UQ33 DNA annealing helicase and endonuclease ZRANB3 isoform X1

1.8e-39

91.49

Show/hide

Query:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        +GKLSF ELGIA+LSGF EWFSIH IISESDGL+DLDLK DSQKMIIFAHHHKVLDGLQELMCEKGIQFV IDGTTLARDRQSAVLLFQSSAEV
Subjt:  MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

A0A6J1JEM2 DNA annealing helicase and endonuclease ZRANB3 isoform X1

1.5e-38

89.25

Show/hide

Query:  GKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        GKLSF ELG+A+LSGF EWFSIH IISE+DGLMDLDLK DSQKMIIFAHHHKVLDG+QELMCEKGIQFV IDGTTLARDRQSAVLLFQSS+EV
Subjt:  GKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

SwissProt top hits

e value

%identity

Alignment

B2ZFP3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

4.8e-05

39.29

Show/hide

Query:  LKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAE
        L+   +K ++FAHH  VLD + + + EK I F+ IDG+T + +RQ     FQ+S +
Subjt:  LKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAE

B4F769 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

9.0e-04

35.59

Show/hide

Query:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS
        ++DL L+   +K ++FAHH  +LD + + +  K +Q + IDG+T + DR+     FQ S
Subjt:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS

Q0P4U8 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

3.7e-05

42.37

Show/hide

Query:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS
        +MDL L+   +K ++FAHH  VLD + E + +K + ++ IDG T + DRQS    FQ S
Subjt:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS

Q498E7 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

1.1e-04

40.68

Show/hide

Query:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS
        ++DL L+   +K ++FAHH  VLD + E + +K + ++ IDG T + DRQS    FQ S
Subjt:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS

Q8BJL0 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

9.0e-04

35.59

Show/hide

Query:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS
        ++DL L    +K ++FAHH  +LD + + +  K +Q + IDG+T + DR++    FQ S
Subjt:  LMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G48310.1 chromatin remodeling factor18

8.4e-05

37.25

Show/hide

Query:  KMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        K ++FAHH  +L+ L + + +K +  + IDG+T A  RQ+ V  FQ   E+
Subjt:  KMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

AT5G07810.1 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

1.9e-25

59.57

Show/hide

Query:  GKLSFLELGIAQLSGFCEWFSIHSIISESDGL-MDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV
        GKLS+ +LGIA+LS F EW S+H ++S  D    ++D    S KM++FAHHHKVLDG+QE +C+KGI FV IDGTTL RDRQ AV  FQ S+EV
Subjt:  GKLSFLELGIAQLSGFCEWFSIHSIISESDGL-MDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAAACTCTCATTTCTTGAACTGGGTATTGCACAGCTATCTGGTTTTTGTGAATGGTTTTCTATTCATTCAATTATTTCTGAATCAGATGGCTTGATGGACTTGGA
TTTGAAGATGGATTCCCAGAAGATGATCATTTTTGCTCATCATCATAAAGTTCTTGATGGATTACAAGAACTTATGTGTGAAAAGGGAATACAATTTGTTCCCATTGATG
GCACAACCCTTGCTCGAGACAGGCAATCTGCAGTACTGTTATTCCAGTCATCAGCTGAGGTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGKLSFLELGIAQLSGFCEWFSIHSIISESDGLMDLDLKMDSQKMIIFAHHHKVLDGLQELMCEKGIQFVPIDGTTLARDRQSAVLLFQSSAEV

Chy2G047280 (gene) of Cucumber (hystrix) v1 genome