; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G047570 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G047570
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 4, chloroplastic
Genome locationchrH02:28411057..28412030
RNA-Seq ExpressionChy2G047570
SyntenyChy2G047570
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR034570 - Photosynthetic NDH subunit of subcomplex B 4, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138173.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis sativus]8.33e-12699.44Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
        MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV+KPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL

Query:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Subjt:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

XP_008453213.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis melo]1.96e-12498.87Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
        MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV KPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSL
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL

Query:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Subjt:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

XP_022987205.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima]2.43e-10787.64Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS
        MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYS
Subjt:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS

Query:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Subjt:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

XP_023516363.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo]5.11e-10988.76Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS
        MAKAIAGFS+I PTLHSSNLHP KS LIPH KL SNSG F HQ+L +  K +RGS+ KV+AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYS
Subjt:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS

Query:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Subjt:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

XP_038880039.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]1.59e-11291.01Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS
        MAKAIAGFSIIKPTLHSSNLH  KS LIP SKLLSNS  F+HQE P+V KP+RGSL K+NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYS
Subjt:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS

Query:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Subjt:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

TrEMBL top hitse value%identityAlignment
A0A0A0LRP8 Uncharacterized protein1.8e-9699.44Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
        MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV+KPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL

Query:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Subjt:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

A0A1S3BVN6 photosynthetic NDH subunit of subcomplex B 4, chloroplastic2.0e-9598.87Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
        MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV KPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSL
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL

Query:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Subjt:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

A0A5A7UWT7 Photosynthetic NDH subunit of subcomplex B 42.0e-9598.87Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL
        MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV KPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSL
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSL

Query:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Subjt:  YIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

A0A6J1E2I6 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like4.2e-8287.08Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS
        MAKAIAGFS++ PTLHSSNLHP KS LIP  KL SNSG F HQ+L +  K +RGS+ KV+AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYS
Subjt:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS

Query:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAG+K
Subjt:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

A0A6J1JG67 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like1.9e-8287.64Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS
        MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYS
Subjt:  MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYS

Query:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Subjt:  LYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

SwissProt top hitse value%identityAlignment
Q8RXS1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic8.6e-4858.7Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPK------RGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAA
        MA+A   F+        +NLH  S+     K   NSG      L K +  K      RGSL    A P D  LMAV+V  ++G RD++T K + HLSD A
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPK------RGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAA

Query:  IKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        IKNVY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Subjt:  IKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

Arabidopsis top hitse value%identityAlignment
AT1G18730.1 NDH dependent flow 66.1e-4958.7Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPK------RGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAA
        MA+A   F+        +NLH  S+     K   NSG      L K +  K      RGSL    A P D  LMAV+V  ++G RD++T K + HLSD A
Subjt:  MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPK------RGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAA

Query:  IKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        IKNVY  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Subjt:  IKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

AT1G18730.2 NDH dependent flow 66.8e-3252.82Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV
        MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL    A P D  LMAV+V  ++G RD++T K + HLSD AIKNV
Subjt:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE
        Y  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYE
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE

AT1G18730.3 NDH dependent flow 62.1e-4960Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV
        MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL    A P D  LMAV+V  ++G RD++T K + HLSD AIKNV
Subjt:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
        Y  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

AT1G18730.4 NDH dependent flow 66.8e-3252.82Show/hide
Query:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV
        MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL    A P D  LMAV+V  ++G RD++T K + HLSD AIKNV
Subjt:  MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNV

Query:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE
        Y  YIMFTCWGCL+FGS KDP+YDSE YR DGGDGTG+WVYE
Subjt:  YSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACCCTGCATAGCTCAAATCTCCACCCCAAATCAGCTCTCATCCCACATTCAAAACTGCTTTCAAACTCTGG
AGGTTTCAGTCATCAAGAACTGCCTAAAGTTATAAAGCCAAAAAGGGGATCTCTAAGCAAAGTGAATGCCTTCCCCGATTGGCAATTGATGGCAGTTCTAGTTGATCATT
TGGATGGCCAAAGAGACCTTGTTACCCATAAATCCATAGTGCATCTTAGTGATGCAGCAATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTG
TTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAAAAGCAAGAAGACATTGAAGAAGC
AGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAACAAAAGGTTGGAGGACTAAGAGAGTTGGAAGAAGCTGGAAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACCCTGCATAGCTCAAATCTCCACCCCAAATCAGCTCTCATCCCACATTCAAAACTGCTTTCAAACTCTGG
AGGTTTCAGTCATCAAGAACTGCCTAAAGTTATAAAGCCAAAAAGGGGATCTCTAAGCAAAGTGAATGCCTTCCCCGATTGGCAATTGATGGCAGTTCTAGTTGATCATT
TGGATGGCCAAAGAGACCTTGTTACCCATAAATCCATAGTGCATCTTAGTGATGCAGCAATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTG
TTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAAAAGCAAGAAGACATTGAAGAAGC
AGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAACAAAAGGTTGGAGGACTAAGAGAGTTGGAAGAAGCTGGAAAGAAATAA
Protein sequenceShow/hide protein sequence
MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVIKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCL
FFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK