; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy2G048270 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy2G048270
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationchrH02:28841649..28853777
RNA-Seq ExpressionChy2G048270
SyntenyChy2G048270
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR010729 - Ribosomal protein L47, mitochondrial
IPR036049 - Ribosomal protein L29/L35 superfamily
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]5.67e-94100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]2.68e-9298.6Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERI KVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

XP_022968794.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima]3.30e-8691.61Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIK VLTERAIDEPDPRR AE+KRM+NAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

XP_023530690.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]2.32e-8691.61Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTR+FGRTFLAAARSE S+ATAAA +TARTGYNPLEEFFE  RSP+D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIK VLTERAIDEPDPRRSAEMKRM+NAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]1.04e-8996.5Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSAT AAAATAR GYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIK VLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein1.7e-72100Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

A0A1S3BWK4 39S ribosomal protein L47, mitochondrial3.2e-7198.6Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERI KVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

A0A5J5BDS6 Uncharacterized protein7.7e-6569.7Show/hide
Query:  ASLPAPSVFSPSFSSVVRPLPAELESFNSSSISAA--------------------MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADR
        ASL +P  F+P F   +R       S ++ S+S +                    MFLTRV GRT  AAA+SETS+A AAAA+T RTG+NPLEEFFEADR
Subjt:  ASLPAPSVFSPSFSSVVRPLPAELESFNSSSISAA--------------------MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADR

Query:  SPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        SPD+ KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+FPNPERIPKVRKSMCRIKHVLTERAI++PDPRRS+EMKRMINAL
Subjt:  SPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like1.4e-6691.61Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIK VLTERAIDEPDPRR AE+KRM+NAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial7.0e-6693.71Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF
        MFLTRV GR FLAAARSETSSA AAAA+TA TGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKF

Query:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKSMCRIK VLTERAIDEPDPRRSAEMKRM+NAL
Subjt:  PNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial6.2e-1143.48Show/hide
Query:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP--NPERIPKVRKSMCRIKHVLTER
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER+  V K+M  IK VL ER
Subjt:  NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFP--NPERIPKVRKSMCRIKHVLTER

Q08DT6 39S ribosomal protein L47, mitochondrial3.9e-1349.43Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  +  V+ ER
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER

Q2H080 54S ribosomal protein L4, mitochondrial2.1e-1143.27Show/hide
Query:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNP---ERIPKVRKSMCRIKHVLTERAIDEPDPR
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F      ER   VR++M  IKHVLTER     D  
Subjt:  LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNP---ERIPKVRKSMCRIKHVLTERAIDEPDPR

Query:  RSAE
        + AE
Subjt:  RSAE

Q8K2Y7 39S ribosomal protein L47, mitochondrial2.3e-1349.43Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER
        LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  +  V+ ER
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER

Q9HD33 39S ribosomal protein L47, mitochondrial1.5e-1248.28Show/hide
Query:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER
        LEEFF+  ++    K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  SM  +  V+ ER
Subjt:  LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTER

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein3.7e-5980.56Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK
        MFLTR  GR FLAAA + + S TAAAAA T RT  NPLEEFFE DRS D+ KPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLK

Query:  FPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL
        FPNPERIPKVR+SMCRIKHVLTERAI+EPD RRSAEMKRM+N +
Subjt:  FPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATGTTTGGTGCTGTCGGCGTCTCACCCTCTCGTCTCAAGTCCCTCACGCTTCGTAGACCTCCGTCGCCACTGCTTCCTCGCTCGCCACGGGAGCTCAGATCGTT
GCCGCTTGGCGGAGACAAGCCTTGTGCGAGCTTACCGGCTCCTTCTGTGTTCAGCCCGTCGTTCAGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGTCTTTCAATT
CAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTACAGCT
AGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAA
GTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGGCAGATGCTGAATGCACAAAATCTAAAGTTCCCTAATCCAG
AACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACTGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATA
AACGCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATGTTTGGTGCTGTCGGCGTCTCACCCTCTCGTCTCAAGTCCCTCACGCTTCGTAGACCTCCGTCGCCACTGCTTCCTCGCTCGCCACGGGAGCTCAGATCGTT
GCCGCTTGGCGGAGACAAGCCTTGTGCGAGCTTACCGGCTCCTTCTGTGTTCAGCCCGTCGTTCAGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGTCTTTCAATT
CAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCTACAGCT
AGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAA
GTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGGCAGATGCTGAATGCACAAAATCTAAAGTTCCCTAATCCAG
AACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACTGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATA
AACGCTCTGTGA
Protein sequenceShow/hide protein sequence
MNMFGAVGVSPSRLKSLTLRRPPSPLLPRSPRELRSLPLGGDKPCASLPAPSVFSPSFSSVVRPLPAELESFNSSSISAAMFLTRVFGRTFLAAARSETSSATAAAAATA
RTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMI
NAL