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Chy3G052960 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G052960
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchrH03:3598328..3598708
RNA-Seq ExpressionChy3G052960
SyntenyChy3G052960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]1.27e-5068.85Show/hide
Query:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG
        +QQFI+KLNV CC C+VWDVEEI CA+AL +LRMLNLDTYSYV EFYY E + ETY+GCI  VG+H  WRV D+V K L PVFK  QA +P KQRI  V 
Subjt:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG

Query:  ESNSSLRCFNCNHKGHNSRTCK
        E NSS +C NCN KGHNSRTCK
Subjt:  ESNSSLRCFNCNHKGHNSRTCK

TYK15459.1 uncharacterized protein E5676_scaffold477G00290 [Cucumis melo var. makuwa]1.80e-3042.4Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++ ETY G + L+G H  W V +     L  VF+   A +PRK+RI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGESNSSLRCFNCNHKGHNSRTCK
         + E + SL+C  C   GHN RTC+
Subjt:  YVGESNSSLRCFNCNHKGHNSRTCK

XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]6.85e-3247.58Show/hide
Query:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG
         +Q I+KLN+G C C+VWD  EI C++AL +L MLNL++YSYV ++Y+++ +L TY G +  +G H  WR+ +    AL P+FK    R P+  R+  +G
Subjt:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG

Query:  ESNSS-LRCFNCNHKGHNSRTCKV
        E NSS  RC +C+ KGHNSRTCK+
Subjt:  ESNSS-LRCFNCNHKGHNSRTCKV

XP_038896605.1 uncharacterized protein LOC120084863 [Benincasa hispida]3.38e-3653.54Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        MD  +QF++KLN   C  QVWD EEI C++ L +LR+LN+D YSY+  +YY+  +  TY GC+  VG H  WRV D   +AL P+FK   AR+P+KQRI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGES-NSSLRCFNCNHKGHNSRTCKV
         VGE+ +SSLRC  C+ KGHNSRTCK+
Subjt:  YVGES-NSSLRCFNCNHKGHNSRTCKV

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]1.16e-3753.54Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        MD  +QF++KLN+G C C+VWD EEISC++AL IL +LN+D YSYV  +YY+  +  TY GC+  +G H  WRV D   +AL P+FK   A  P+KQRI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGES-NSSLRCFNCNHKGHNSRTCKV
           E+ +SSLRC  C+ KGHNSRTCK+
Subjt:  YVGES-NSSLRCFNCNHKGHNSRTCKV

TrEMBL top hitse value%identityAlignment
A0A5A7SVB1 ZnF_PMZ domain-containing protein3.5e-2241.94Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        +D  + F++KLN   C C  WD+EEI CAYAL ++R LNL+ Y++V ++YY  ++  TY G +  +  H  W V +     L PVF+   A +PRK+RI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGESNSSLRCFNCNHKGHNSRTC
         +GE + S +C  C   GHN RTC
Subjt:  YVGESNSSLRCFNCNHKGHNSRTC

A0A5A7V6N4 SWIM-type domain-containing protein9.2e-2341.94Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        +D  + F++KLN   C C  WD+EEISCA+AL ++R LNL+ Y++V ++YY  ++  TY G +  +G H  W V +     L P+F+    R PRK+RI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGESNSSLRCFNCNHKGHNSRTC
         +GE + S +C  C   GHN RTC
Subjt:  YVGESNSSLRCFNCNHKGHNSRTC

A0A5D3BVP4 SWIM-type domain-containing protein1.6e-2241.6Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++  TY G +  +G H  W V +     L PVF+   A +PRK+RI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGESNSSLRCFNCNHKGHNSRTCK
         +GE + S +C  C   GHN RTC+
Subjt:  YVGESNSSLRCFNCNHKGHNSRTCK

A0A5D3C7L7 Uncharacterized protein1.9e-3968.85Show/hide
Query:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG
        +QQFI+KLNV CC C+VWDVEEI CA+AL +LRMLNLDTYSYV EFYY E + ETY+GCI  VG+H  WRV D+V K L PVFK  QA +P KQRI  V 
Subjt:  SQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVG

Query:  ESNSSLRCFNCNHKGHNSRTCK
        E NSS +C NCN KGHNSRTCK
Subjt:  ESNSSLRCFNCNHKGHNSRTCK

A0A5D3CZ48 SWIM-type domain-containing protein5.4e-2342.4Show/hide
Query:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS
        +D  + F++KLN   C C  WD+EEI CA+AL ++R LNL+ Y++V ++YY  ++ ETY G + L+G H  W V +     L  VF+   A +PRK+RI 
Subjt:  MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRIS

Query:  YVGESNSSLRCFNCNHKGHNSRTCK
         + E + SL+C  C   GHN RTC+
Subjt:  YVGESNSSLRCFNCNHKGHNSRTCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAGTCAACAGTTCATTATGAAGTTAAATGTGGGATGTTGCAGGTGTCAAGTATGGGATGTTGAGGAAATTTCATGTGCATATGCGCTTGCTATTCTACGAAT
GCTTAATTTAGATACATATTCATATGTATTTGAGTTTTATTATACAGAAATGATATTAGAAACATACAGTGGTTGCATTCATCTTGTTGGCACTCATTTGTATTGGAGAG
TTGAAGATGCTGTTCAGAAAGCATTACATCCAGTCTTTAAATTATGTCAAGCTAGAAAACCAAGAAAACAAAGAATTTCATATGTAGGCGAAAGTAATAGTTCATTAAGA
TGTTTCAACTGTAATCATAAAGGACACAATAGTAGGACTTGCAAAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAAGTCAACAGTTCATTATGAAGTTAAATGTGGGATGTTGCAGGTGTCAAGTATGGGATGTTGAGGAAATTTCATGTGCATATGCGCTTGCTATTCTACGAAT
GCTTAATTTAGATACATATTCATATGTATTTGAGTTTTATTATACAGAAATGATATTAGAAACATACAGTGGTTGCATTCATCTTGTTGGCACTCATTTGTATTGGAGAG
TTGAAGATGCTGTTCAGAAAGCATTACATCCAGTCTTTAAATTATGTCAAGCTAGAAAACCAAGAAAACAAAGAATTTCATATGTAGGCGAAAGTAATAGTTCATTAAGA
TGTTTCAACTGTAATCATAAAGGACACAATAGTAGGACTTGCAAAGTTTAA
Protein sequenceShow/hide protein sequence
MDESQQFIMKLNVGCCRCQVWDVEEISCAYALAILRMLNLDTYSYVFEFYYTEMILETYSGCIHLVGTHLYWRVEDAVQKALHPVFKLCQARKPRKQRISYVGESNSSLR
CFNCNHKGHNSRTCKV