; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy3G053210 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G053210
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchrH03:4392295..4393117
RNA-Seq ExpressionChy3G053210
SyntenyChy3G053210
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]9.54e-13476.34Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH +EVPPMTQTQSEH YVSP+MMMP FG TY+DSGVGQS DFG  YYN +AG SS++FGQQYYDLGSDPSSSYMHGHGRGRG+HNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPEQLDE---------------QQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPEQ DE               QQQ EN EEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPEQLDE---------------QQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.98e-13276.72Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YI+WYKNI++LYIT+PGA MSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH EEVPPMTQTQSEH YVSP+MMMP FG TY+DS VGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPEQL---------------DEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPEQ                DEQQQ ENQEEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPEQL---------------DEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]6.27e-12676.34Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH +EVPPMTQTQSEH YVSP+MMMP FG TY+DSGVGQS DFG  YYN +AG SS++FGQQYYDLGSDPSSSYMHGHGRGRG+HNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPEQLDE---------------QQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPEQ DE               QQQ EN EEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPEQLDE---------------QQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]3.79e-13374.62Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN+RL+++ADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH
        Q+ DQLEEVDQH EEVPPMTQTQ  SEH YVSP+MMMP FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQ--SEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH

Query:  LYYEVPAAVPEQLDEQQQHEN---------------QEEIQQQRVQSRRRQPVRNRRHPGCGKH
        LYY+VPAAVPEQ DEQQQ EN                EEIQQQRVQ RRRQ  +NR+ PGCG H
Subjt:  LYYEVPAAVPEQLDEQQQHEN---------------QEEIQQQRVQSRRRQPVRNRRHPGCGKH

XP_016900498.1 PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo]5.14e-12475.82Show/hide
Query:  MDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMT
        MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN+RL+++ADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   Q+ DQLEEVDQH EEVPPMT
Subjt:  MDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVDQHVEEVPPMT

Query:  QTQ--SEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLYYEVPAAVPEQLDEQQQHE
        QTQ  SEH YVSP+MMMP FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+LYY+VPAAVPEQ DEQQQ E
Subjt:  QTQ--SEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLYYEVPAAVPEQLDEQQQHE

Query:  N---------------QEEIQQQRVQSRRRQPVRNRRHPGCGKH
        N                EEIQQQRVQ RRRQ  +NR+ PGCG H
Subjt:  N---------------QEEIQQQRVQSRRRQPVRNRRHPGCGKH

TrEMBL top hitse value%identityAlignment
A0A1S3BLK4 mediator of RNA polymerase II transcription subunit 12-like isoform X13.6e-10374.62Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN+RL+++ADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPM--TQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH
        Q+ DQLEEVDQH EEVPPM  TQTQSEH YVSP+MMMP FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+
Subjt:  QKPDQLEEVDQHVEEVPPM--TQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH

Query:  LYYEVP---------------AAVPEQLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        LYY+VP               AAVPEQ DEQQQ EN EEIQQQRVQ RRRQ  +NR+ PGCG H
Subjt:  LYYEVP---------------AAVPEQLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

A0A5A7T598 Serine/threonine-protein phosphatase 7 long form-like protein2.0e-10676.34Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH +EVPPMTQTQSEH YVSP+MMMP FG TY+DSGVGQS DFG  YYN +AG SS++FGQQYYDLGSDPSSSYMHGHGRGRG+HNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPE               Q DEQQQ EN EEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.4e-10676.72Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YI+WYKNI++LYIT+PGA MSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH EEVPPMTQTQSEH YVSP+MMMP FG TY+DS VGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPE               Q DEQQQ ENQEEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein2.0e-10676.34Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN RL++VADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY
        Q+PDQLEEVDQH +EVPPMTQTQSEH YVSP+MMMP FG TY+DSGVGQS DFG  YYN +AG SS++FGQQYYDLGSDPSSSYMHGHGRGRG+HNE+LY
Subjt:  QKPDQLEEVDQHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLY

Query:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        YEVPAAVPE               Q DEQQQ EN EEIQQQRVQSRRRQP RNRR PGCG H
Subjt:  YEVPAAVPE---------------QLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.6e-10374.62Show/hide
Query:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG
        MRW NR RF   G PI QF MDVT +YIHWYKNI++LYIT+PGAAMSHLRSNN+RL+++ADDPQQVLNIC++NEQY ENIHYMYDVPIVP+PVQRRR   
Subjt:  MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARG

Query:  QKPDQLEEVDQHVEEVPPM--TQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH
        Q+ DQLEEVDQH EEVPPM  TQTQSEH YVSP+MMMP FGMTY+DSGVGQS DFG  YYN EAG SS++FGQQYYDLGSDPSSSYMHGHGRGRGEHNE+
Subjt:  QKPDQLEEVDQHVEEVPPM--TQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEH

Query:  LYYEVP---------------AAVPEQLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH
        LYY+VP               AAVPEQ DEQQQ EN EEIQQQRVQ RRRQ  +NR+ PGCG H
Subjt:  LYYEVP---------------AAVPEQLDEQQQHENQEEIQQQRVQSRRRQPVRNRRHPGCGKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATGGCTAAATCGCATAAGGTTTATTGTTGAGGGACATCCAATTAGGCAATTTCATATGGATGTAACTCCAAAATACATCCATTGGTACAAAAACATCACTAGGCT
TTATATCACCCGACCGGGAGCTGCTATGAGTCATCTGAGATCGAATAATAGTAGACTTCAAGATGTTGCAGATGATCCACAACAGGTCCTAAATATATGCAGCGAAAACG
AGCAGTACAGGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTTCTCCAGTCCAAAGGAGACGTGCTCGAGGACAAAAGCCTGATCAATTGGAAGAAGTTGAC
CAACACGTGGAAGAAGTGCCTCCCATGACACAGACACAGAGCGAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAATGACATATCATGATTCAGGAGT
CGGTCAATCACCAGACTTTGGAATAAGATATTATAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGCGATCCATCATCTTCAT
ACATGCATGGTCACGGGCGCGGTCGTGGAGAACATAATGAACATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAACTAGATGAGCAACAACAACATGAGAATCAG
GAAGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAGTTAGAAATCGTCGACATCCAGGTTGTGGAAAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATGGCTAAATCGCATAAGGTTTATTGTTGAGGGACATCCAATTAGGCAATTTCATATGGATGTAACTCCAAAATACATCCATTGGTACAAAAACATCACTAGGCT
TTATATCACCCGACCGGGAGCTGCTATGAGTCATCTGAGATCGAATAATAGTAGACTTCAAGATGTTGCAGATGATCCACAACAGGTCCTAAATATATGCAGCGAAAACG
AGCAGTACAGGGAGAACATTCACTATATGTACGATGTCCCTATTGTACCTTCTCCAGTCCAAAGGAGACGTGCTCGAGGACAAAAGCCTGATCAATTGGAAGAAGTTGAC
CAACACGTGGAAGAAGTGCCTCCCATGACACAGACACAGAGCGAGCATGGTTACGTTAGTCCAATAATGATGATGCCAGCATTTGGAATGACATATCATGATTCAGGAGT
CGGTCAATCACCAGACTTTGGAATAAGATATTATAATTTAGAGGCAGGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGAAGCGATCCATCATCTTCAT
ACATGCATGGTCACGGGCGCGGTCGTGGAGAACATAATGAACATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAACTAGATGAGCAACAACAACATGAGAATCAG
GAAGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAGTTAGAAATCGTCGACATCCAGGTTGTGGAAAACATTGA
Protein sequenceShow/hide protein sequence
MRWLNRIRFIVEGHPIRQFHMDVTPKYIHWYKNITRLYITRPGAAMSHLRSNNSRLQDVADDPQQVLNICSENEQYRENIHYMYDVPIVPSPVQRRRARGQKPDQLEEVD
QHVEEVPPMTQTQSEHGYVSPIMMMPAFGMTYHDSGVGQSPDFGIRYYNLEAGPSSSNFGQQYYDLGSDPSSSYMHGHGRGRGEHNEHLYYEVPAAVPEQLDEQQQHENQ
EEIQQQRVQSRRRQPVRNRRHPGCGKH