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Chy3G057760 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G057760
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchrH03:10949259..10949665
RNA-Seq ExpressionChy3G057760
SyntenyChy3G057760
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059920.1 hypothetical protein E6C27_scaffold108G002250 [Cucumis melo var. makuwa]2.26e-0653.7Show/hide
Query:  EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
        E G+C   I  ++ +       KLGH+ EDCSSS D AEE+DCNSRFGTG ED 
Subjt:  EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDL
KGN47724.1 hypothetical protein Csa_018306 [Cucumis sativus]1.22e-6896.04Show/hide
Query:  MAIVFSNMVRRFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYKELRVRNRGGLGRL
        MAIVFSNMVRRFE DEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKY+ELR+ NRGGLGRL
Subjt:  MAIVFSNMVRRFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYKELRVRNRGGLGRL

Query:  L
        L
Subjt:  L
OMP01185.1 Zinc finger, CCHC-type [Corchorus olitorius]3.18e-0636.23Show/hide
Query:  MVRRFEAD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
        +V+ F  D  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G+      DW
Subjt:  MVRRFEAD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]9.58e-0439.62Show/hide
Query:  RFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFG
        R +  + G+CW R    RL +FCY CGKLGH  +DC            N  FG
Subjt:  RFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFG
TrEMBL top hitse value%identityAlignment
A0A0A0KFU3 CCHC-type domain-containing protein2.9e-5196.04Show/hide
Query:  MAIVFSNMVRRFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYKELRVRNRGGLGRL
        MAIVFSNMVRRFE DEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKY+ELR+ NRGGLGRL
Subjt:  MAIVFSNMVRRFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYKELRVRNRGGLGRL

Query:  L
        L
Subjt:  L
A0A1R3K269 Zinc finger, CCHC-type5.9e-0436.23Show/hide
Query:  MVRRFEAD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
        +V+ F  D  ++G  W  +   RL DFCY CGKLGH  + C     + E+ + + RFG G+      DW
Subjt:  MVRRFEAD--EKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDW
A0A5D3DML9 Uncharacterized protein7.7e-0480.65Show/hide
Query:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVED
        KLGH+ EDC SSSD AEE+DCNSRFGTG ED
Subjt:  KLGHVLEDCSSSSDTAEEQDCNSRFGTGVED
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGGCGGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGGCTCATGGATTTCTGCTATGAATGTGG
AAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACT
GGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAAAGAGTTGAGAGTACGAAACAGAGGAGGGCTGGGAAGGCTACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATTGTGTTTAGCAATATGGTCAGGAGGTTCGAGGCGGATGAGAAAGGAATGTGTTGGGGAAGAATTACGAGAGTTAGGCTCATGGATTTCTGCTATGAATGTGG
AAAGCTGGGGCACGTCCTTGAAGACTGCAGTTCTTCTTCTGATACAGCAGAGGAACAAGATTGCAATTCTCGTTTTGGTACTGGAGTGGAAGACTTGAGCTATGAAGACT
GGCCTGGAGGGGTGAGAAAGGGAGGGGATGAGAAGTATAAAGAGTTGAGAGTACGAAACAGAGGAGGGCTGGGAAGGCTACTATAA
Protein sequenceShow/hide protein sequence
MAIVFSNMVRRFEADEKGMCWGRITRVRLMDFCYECGKLGHVLEDCSSSSDTAEEQDCNSRFGTGVEDLSYEDWPGGVRKGGDEKYKELRVRNRGGLGRLL