; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy3G059590 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G059590
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchrH03:13282096..13283391
RNA-Seq ExpressionChy3G059590
SyntenyChy3G059590
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.12e-7885Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDN+RMP+EYQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWY DLE ESIDSWE LE DFLNRFYS RRIVSM+EL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        T TK  KG+ VIDYINRWRALSLDCKD+LTE+SAVE+CTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.38e-7887.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.38e-7887.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
TYK26922.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.84e-7986.43Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCET  TRG+LLVKQF+RTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
TYK28990.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.55e-7987.14Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPK QQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
TrEMBL top hitse value%identityAlignment
A0A5A7UUI7 Ty3-gypsy retrotransposon protein3.5e-6687.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
A0A5A7V6U6 Ty3-gypsy retrotransposon protein3.5e-6687.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
A0A5D3CSH0 Ty3-gypsy retrotransposon protein3.5e-6687.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
A0A5D3D4X3 Ty3-gypsy retrotransposon protein3.5e-6687.86Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPKFQQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
A0A5D3E0F3 Ty3-gypsy retrotransposon protein1.3e-6587.14Show/hide
Query:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL
        PYTKRIDNLRMPN YQPPK QQF+GKGNP+QHVAHFIETCETA TRG+LLVKQFVRTLKGNA DWYIDLE ESID+WE LE DFLNRFYSTRRIVSMMEL
Subjt:  PYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETASTRGELLVKQFVRTLKGNALDWYIDLEHESIDSWE*LEGDFLNRFYSTRRIVSMMEL

Query:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
        TNT+  KG+ VIDYINRWRALSLDCKD+LTE+SAVEMCTQ
Subjt:  TNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAAGATTGAAGACTTGGACGATTAAACTTTCCTTGGATTCCAGAAGATCGAAGTTCAAATCAACTTGCAACAACAACATCCTAAAGACCGAAGATCAAGAAGTTCTAAA
GTTTTTATCTTGTATTCGAGAGAAAGCATCAAAGGAGTAAATATTAGAGATTGTATTCACTATATTCATCAATACACAAAGTTCAATTCCACGAATCACATTTCTTCGAA
ATCTCGTGTGAACAGTTTGGCACGCCCAGTGGGACAATCTCTACCTTTCATCTCTTTCTCTTTTGAAGAACATCTAAATAAATTATGACATCCCAAGGCAATACTTCCAA
AGCTCCAAGTGACATCGGCAAGCAGCCAAATACTCGCAGCCGCTCAAGGGAGACTCAATCATATGAGGAAATGCCATCCTTTGAGGTCGCAAAGAACATTTGGGAGCAAC
TGTCCAAGCCACAAAAAGGTGGAATTATAATCAAAGAAAATCCTATGATCGACGAACAAATTTCTTCCTATGAACGCTCGAATGAAGAGATGTCTCATCCAAATATCATG
TCGGTTATGGTGACTGGCGTGGATACAAGTGAAGACAGAATGACTGAGCTTGAAAAGAAGATCAACATGCTCATGAAGGCCGTTGAAGAAAAGGATAATGAGATTGCATC
TCTCAAGAATCACATCGAACGTCGTGATGCTGCTGAATCAAGTCATAAACATACTATAAAAAATACTGACAAAGGGAAGGCAGTTATGCAAGAAAGTTAATCACAAAATT
CGACCTCAATTGCATCGTTGTCTGTTCAGCAGTTGCAAGAGATGATTGCAAACTCCATCAAAACTCAATATGGTGGACCTGCCCAAACTCTCTCTCTATATTCATACCAT
ACACAAAGAGGATCGACAATCTCAGAATGCCGAATGAATACCAACCACCCAAGTTCCAACAGTTTAATGGAAAGGGTAACCCAAGACAACATGTTGCTCACTTCATTGAA
ACATGTGAAACTGCTAGTACGAGAGGAGAATTGTTGGTAAAACAGTTCGTTCGAACTCTGAAAGGAAACGCCTTAGACTGGTACATCGACCTGGAACATGAATCCATTGA
CAGTTGGGAGTAGCTTGAGGGGGACTTTCTCAATCGCTTCTACAGCACCCGACGCATAGTCAGCATGATGGAGTTGACAAATACCAAACCATGGAAGGGGAAGTCAGTCA
TTGACTACATAAACCGATGGAGAGCTCTAAGCTTGGATTGCAAAGACAAGCTCACAGAAATGTCTGCAGTTGAGATGTGCACCCAA
mRNA sequenceShow/hide mRNA sequence
GAAAGATTGAAGACTTGGACGATTAAACTTTCCTTGGATTCCAGAAGATCGAAGTTCAAATCAACTTGCAACAACAACATCCTAAAGACCGAAGATCAAGAAGTTCTAAA
GTTTTTATCTTGTATTCGAGAGAAAGCATCAAAGGAGTAAATATTAGAGATTGTATTCACTATATTCATCAATACACAAAGTTCAATTCCACGAATCACATTTCTTCGAA
ATCTCGTGTGAACAGTTTGGCACGCCCAGTGGGACAATCTCTACCTTTCATCTCTTTCTCTTTTGAAGAACATCTAAATAAATTATGACATCCCAAGGCAATACTTCCAA
AGCTCCAAGTGACATCGGCAAGCAGCCAAATACTCGCAGCCGCTCAAGGGAGACTCAATCATATGAGGAAATGCCATCCTTTGAGGTCGCAAAGAACATTTGGGAGCAAC
TGTCCAAGCCACAAAAAGGTGGAATTATAATCAAAGAAAATCCTATGATCGACGAACAAATTTCTTCCTATGAACGCTCGAATGAAGAGATGTCTCATCCAAATATCATG
TCGGTTATGGTGACTGGCGTGGATACAAGTGAAGACAGAATGACTGAGCTTGAAAAGAAGATCAACATGCTCATGAAGGCCGTTGAAGAAAAGGATAATGAGATTGCATC
TCTCAAGAATCACATCGAACGTCGTGATGCTGCTGAATCAAGTCATAAACATACTATAAAAAATACTGACAAAGGGAAGGCAGTTATGCAAGAAAGTTAATCACAAAATT
CGACCTCAATTGCATCGTTGTCTGTTCAGCAGTTGCAAGAGATGATTGCAAACTCCATCAAAACTCAATATGGTGGACCTGCCCAAACTCTCTCTCTATATTCATACCAT
ACACAAAGAGGATCGACAATCTCAGAATGCCGAATGAATACCAACCACCCAAGTTCCAACAGTTTAATGGAAAGGGTAACCCAAGACAACATGTTGCTCACTTCATTGAA
ACATGTGAAACTGCTAGTACGAGAGGAGAATTGTTGGTAAAACAGTTCGTTCGAACTCTGAAAGGAAACGCCTTAGACTGGTACATCGACCTGGAACATGAATCCATTGA
CAGTTGGGAGTAGCTTGAGGGGGACTTTCTCAATCGCTTCTACAGCACCCGACGCATAGTCAGCATGATGGAGTTGACAAATACCAAACCATGGAAGGGGAAGTCAGTCA
TTGACTACATAAACCGATGGAGAGCTCTAAGCTTGGATTGCAAAGACAAGCTCACAGAAATGTCTGCAGTTGAGATGTGCACCCAA
Protein sequenceShow/hide protein sequence
ERLKTWTIKLSLDSRRSKFKSTCNNNILKTEDQEVLKFLSCIREKASKEILEIVFTIFINTQSSIPRITFLRNLVTVWHAQWDNLYLSSLSLLKNI*INYDIPRQYFQSS
K*HRQAAKYSQPLKGDSIIGNAIL*GRKEHLGATVQATKRWNYNQRKSYDRRTNFFL*TLE*RDVSSKYHVGYGDWRGYKRQND*A*KEDQHAHEGR*RKG**DCISQES
HRTS*CC*IKS*TYYKKYQREGSYARKLITKFDLNCIVVCSAVARDDCKLHQNSIWWTCPNSLSIFIPYTKRIDNLRMPNEYQPPKFQQFNGKGNPRQHVAHFIETCETA
STRGELLVKQFVRTLKGNALDWYIDLEHESIDSWELEGDFLNRFYSTRRIVSMMELTNTKPWKGKSVIDYINRWRALSLDCKDKLTEMSAVEMCTQ