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Chy3G060080 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G060080
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationchrH03:13843187..13845696
RNA-Seq ExpressionChy3G060080
SyntenyChy3G060080
Gene Ontology termsGO:0006363 - termination of RNA polymerase I transcription (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR034004 - Pol I subunit A12, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598510.1 DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia]7.40e-6397.98Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

XP_004143007.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus]2.40e-6498.99Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSFCSTKYVECP CKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

XP_008445334.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo]1.14e-6296.97Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSFCSTKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLGISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

XP_022962626.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata]2.80e-6397.98Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

XP_023546814.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo]2.80e-6397.98Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

TrEMBL top hitse value%identityAlignment
A0A0A0LKC4 DNA-directed RNA polymerase subunit1.7e-4898.99Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSFCSTKYVECP CKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

A0A1S3BBZ4 DNA-directed RNA polymerase subunit3.2e-4796.97Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSFCSTKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLGISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

A0A6J1CTE6 DNA-directed RNA polymerase subunit4.2e-4795.96Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLGISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

A0A6J1HDS4 DNA-directed RNA polymerase subunit1.1e-4797.98Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

A0A6J1KC19 DNA-directed RNA polymerase subunit9.4e-4795.96Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        MLSF STKYVECPLCKSRRSAK I+GREISYTVTAEEIRKQLGISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

SwissProt top hitse value%identityAlignment
Q1RMP0 DNA-directed RNA polymerase I subunit RPA121.5e-0934.44Show/hide
Query:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        V C  C    + ++  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Subjt:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Q1XHV8 DNA-directed RNA polymerase I subunit RPA124.4e-0934.44Show/hide
Query:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        V C  C    + ++  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Subjt:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Q5TM50 DNA-directed RNA polymerase I subunit RPA122.6e-0934.44Show/hide
Query:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        V C  C    + ++  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Subjt:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Q6MFY5 DNA-directed RNA polymerase I subunit RPA121.3e-0834.44Show/hide
Query:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        V CP C      ++  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT FYTC  C  Q +E+
Subjt:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Q9P1U0 DNA-directed RNA polymerase I subunit RPA124.4e-0934.44Show/hide
Query:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
        V C  C    + ++  G+ +  +V   ++   + +S+ +  + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Subjt:  VECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal1.6e-0631.58Show/hide
Query:  FCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE
        FCST    CP     +   EI  +++        ++K +   +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Subjt:  FCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE

AT1G20065.1 FUNCTIONS IN: molecular_function unknown1.2e-0957.78Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGIS
        ML   STKY ECPLC++ R+ KEI+ + ++YTVT E+IR++LGIS
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGIS

AT1G20065.2 FUNCTIONS IN: molecular_function unknown6.1e-0655.56Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAE
        ML   STKY ECPLC++ R+ KEI+ + ++YTVT E
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAE

AT3G25940.1 TFIIB zinc-binding protein2.9e-2453.47Show/hide
Query:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEE---KMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTR
        ML   STKY ECP CK+ R+AK+I+ +EI+YTV+AE+IR++LGISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  
Subjt:  MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEE---KMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTR

Query:  E
        E
Subjt:  E

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.6e-0631.58Show/hide
Query:  FCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE
        FCST    CP   +     EI  +++        ++K +   +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Subjt:  FCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCGTCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGA
AATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCA
GACAGATGAGATCGGCTGATGAAGGCCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCGTCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGA
AATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCA
GACAGATGAGATCGGCTGATGAAGGCCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGA
Protein sequenceShow/hide protein sequence
MLSFCSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN