CuGenDBv2

Gene ID	Chy3G064280
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA polymerase epsilon catalytic subunit A, putative
Genome location	chrH03:17091219..17091916
RNA-Seq Expression	Chy3G064280
Synteny	Chy3G064280
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]

8.04e-63

75.74

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLE+EHLRA+S+PVD     +TVGIDYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS

XP_004152691.1 uncharacterized protein LOC101215562 [Cucumis sativus]

2.53e-101

97.96

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLEKEHLRAVSLPVDDRYDCETVG+DYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]

5.05e-90

90.48

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSV+FKRNRSLTKEEIDAYWKSKRKLE+EHLRA+SLPVD RYD E VGIDYKRSSSFPPA+D VAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

XP_022951681.1 uncharacterized protein LOC111454424 [Cucurbita moschata]

5.66e-63

75.74

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLE+EHLRA+S+PVD     +TVGIDYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS

XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]

1.34e-80

80.95

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLM GWNSPVLDPKSV+FKRNRSLTK+EI+AYWKSK+K E+EHLRA+S+PVD   D ETVGIDYKRSSSFPPAKD V+ EA+F EN ++R+NLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGA+K   SLYGVADVASCKLNHSNGVG+
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRI3 Uncharacterized protein

5.3e-78

97.96

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLEKEHLRAVSLPVDDRYDCETVG+DYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

A0A1S3BBS7 uncharacterized protein LOC103487979

2.0e-69

90.48

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSV+FKRNRSLTKEEIDAYWKSKRKLE+EHLRA+SLPV DRYD E VGIDYKRSSSFPPA+ DVAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A

2.0e-69

90.48

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSV+FKRNRSLTKEEIDAYWKSKRKLE+EHLRA+SLPV DRYD E VGIDYKRSSSFPPA+ DVAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

A0A6J1GI71 uncharacterized protein LOC111454424

8.8e-49

75.74

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLE+EHLRA+S+PVD     +TVGIDYKRSSSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS

A0A6J1KP90 uncharacterized protein LOC111496358

1.5e-48

75.74

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSV+FKRNRSLTKEEI+AYWKSKRKLE+EHLRA+S+PVD     +TVGIDYKRSSSF PA    A +  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G19530.1 unknown protein

1.4e-14

38.24

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Query:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELK
        MGSLM GW+S V DPKSV  +R +SLT+EEID +WK+K+K  E+EH++A S  V                          A E K V++  + ++    K
Subjt:  MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELK

Query:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA
          GWW ++  AFLNEP   +G     VS + VA +A
Subjt:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA

Sequences

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CDS sequence

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ATGGGCTCTCTAATGGGCGGATGGAATTCTCCCGTTCTCGATCCCAAATCAGTCGAGTTCAAGAGAAATCGGTCACTTACCAAAGAAGAAATCGACGCATACTGG
AAATCGAAGAGGAAATTGGAGAAAGAACATCTCAGAGCGGTTTCTTTGCCGGTGGACGATCGTTATGATTGTGAAACAGTTGGAATAGACTACAAAAGATCGAGT
TCGTTTCCGCCGGCGAAGGACGACGTTGCGGTGGAAGCAAAATTTGTTGAGAACAAAATGGACAGGAAAAACCTAGAGGAATTGAAGAAAATTGGCTGGTGGACG
AGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTTCAAAAGCTTGCGTGTCGTTGTACGGCGTCGCCGACGTGGCCTCGTGTAAGTTGAAT
CACAGCAATGGAGTCGGTGCTTAG

mRNA sequence

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Protein sequence

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MGSLMGGWNSPVLDPKSVEFKRNRSLTKEEIDAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGIDYKRSSSFPPAKDDVAVEAKFVENKMDRKNLEELKKIGWWT
RSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA

Chy3G064280 (gene) of Cucumber (hystrix) v1 genome