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Chy3G064320 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G064320
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein RADIALIS-like 4
Genome locationchrH03:17109597..17110883
RNA-Seq ExpressionChy3G064320
SyntenyChy3G064320
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]3.21e-5896.77Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQR
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT+EEVKRHYDILLQDLMHIESGKVPLPNYKPV PNGSMYDDEQR
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]4.62e-6497.03Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+APNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]6.57e-6497.03Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT+EEVKRHYDILLQDLMHIESGKVPLPNYKPV PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]1.62e-5584.16Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MA+S FKSS +SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT+EEVKRHYDIL+QDLMHIESGK+PLPNYKP+  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]6.09e-6092.08Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MASSSFKSS +SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT+EEVKRHYDILLQDLMHIESGKVPLPNYKP+  NGS+Y DEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein5.1e-4897.03Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+APNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 46.7e-4897.03Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT+EEVKRHYDILLQDLMHIESGKVPLPNYKPV PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VC75 Protein RADIALIS-like 41.7e-4396.77Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQR
        MASSSFKSS NSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT+EEVKRHYDILLQDLMHIESGKVPLPNYKPV PNGSMYDDEQR
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQR

A0A6J1HFA3 protein RADIALIS-like 41.6e-4184.16Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MA+S FKSS +SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT+EEVKRHYDIL+QDLMHIESGK+PLPNYKP+  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 41.6e-4184.16Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL
        MA+S FKSS +SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT+EEVKRHYDIL+QDLMHIESGK+PLPNYKP+  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.5e-2558.25Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV--APNGSMYDDEQRLMKNL
        MASSS   SS SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT+EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 65.3e-2661.7Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNG-SMYDDEQRLMKNLKL

Q58FS3 Transcription factor RADIALIS4.6e-2254.26Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKLQ
        S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+IL++D+ +IESGKVP PNY+     G+M  DE+R  +NLK++
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 59.0e-2660.82Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV---APNGSMYDDEQRLMKNLKLQ
        SS +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K++EEVKRHYDIL++DLM+IE   VPLP YK V   + +  + D + RLMKN+++Q
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV---APNGSMYDDEQRLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 21.4e-2356.73Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPN---GSMYDDEQRLMKN
        MAS S   SS  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.4e-2760.82Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV---APNGSMYDDEQRLMKNLKLQ
        SS +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K++EEVKRHYDIL++DLM+IE   VPLP YK V   + +  + D + RLMKN+++Q
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV---APNGSMYDDEQRLMKNLKLQ

AT1G75250.1 RAD-like 61.3e-2461.45Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDD
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N    +D
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDD

AT1G75250.2 RAD-like 63.8e-2761.7Show/hide
Query:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNG-SMYDDEQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2456.73Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPN---GSMYDDEQRLMKN
        MAS S   SS  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

AT4G39250.1 RAD-like 13.2e-2658.25Show/hide
Query:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV--APNGSMYDDEQRLMKNL
        MASSS   SS SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT+EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPV--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTTTTAAATCTTCAAGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACATCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCGTTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTTTTAAATCTTCAAGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACATCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCGTTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
Protein sequenceShow/hide protein sequence
MASSSFKSSSNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTSEEVKRHYDILLQDLMHIESGKVPLPNYKPVAPNGSMYDDEQRLMKNLKLQ