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Chy3G067080 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy3G067080
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRNA polymerases N / 8 kDa subunit
Genome locationchrH03:18767178..18768002
RNA-Seq ExpressionChy3G067080
SyntenyChy3G067080
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0055029 - nuclear DNA-directed RNA polymerase complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652040.1 hypothetical protein Csa_018608 [Cucumis sativus]1.89e-6257.22Show/hide
Query:  MERKYRRGQTLIGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVLAYPPPPKFSITLNSTHLLEPFGWVIGN
        ME+KY+RGQTL+GIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWV                         IGN
Subjt:  MERKYRRGQTLIGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVLAYPPPPKFSITLNSTHLLEPFGWVIGN

Query:  KWDLYLDLLKADYSEG----------------------------------------------------SQYWRLVKEKIQCMTRVELCLGVPLC
        KWD YLDLL+ADYSEG                                                    SQYWRL+KEKIQCMTRVELCLGVPLC
Subjt:  KWDLYLDLLKADYSEG----------------------------------------------------SQYWRLVKEKIQCMTRVELCLGVPLC
KAF2909906.1 hypothetical protein DAI22_11g061800, partial [Oryza sativa Japonica Group]1.18e-0442.65Show/hide
Query:  PPPKFSITLNSTHLLEPF-----GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        P P+  I   +  ++ P      G VIGNKWDLYLDLL+ADY+EG     L   +  C    MT V+L
Subjt:  PPPKFSITLNSTHLLEPF-----GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
KAG6419837.1 hypothetical protein SASPL_116349 [Salvia splendens]6.40e-0555.56Show/hide
Query:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        G VIGNKWD+YLDLL+ADYSEG     L+  +  C    MT V+L
Subjt:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
VAH81139.1 unnamed protein product [Triticum turgidum subsp. durum]1.21e-0442.03Show/hide
Query:  WVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        W  ++P P +       T L+   G VIGNKWD YLDLL+ADY+EG     L   +  C    MT V+L
Subjt:  WVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
XP_041992151.1 DNA-directed RNA polymerases II, IV and V subunit 10-like [Salvia splendens]8.25e-0555.56Show/hide
Query:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        G VIGNKWD+YLDLL+ADYSEG     L+  +  C    MT V+L
Subjt:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.3e-0451.11Show/hide
Query:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        G VIGNKWD YLDLL+ DY+EG     L   +  C    MT V+L
Subjt:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
AT1G61700.1 RNA polymerases N / 8 kDa subunit9.7e-0551.11Show/hide
Query:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL
        G VIGNKWD YL+LL+ADY+EG     L   +  C    MT V+L
Subjt:  GWVIGNKWDLYLDLLKADYSEGSQYWRLVKEKIQC----MTRVEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGAAATACCGAAGGGGTCAAACCCTGATTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCAC
TTGCGGGAAGGTAAGCTATGGACAACTATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTT
TGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTGGGTGATTGGAAACAAGTGGGATCTTTAC
CTTGATCTTCTGAAGGCCGATTATTCAGAAGGGAGTCAGTATTGGCGTTTAGTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCG
CTCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGAAATACCGAAGGGGTCAAACCCTGATTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCAC
TTGCGGGAAGGTAAGCTATGGACAACTATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTT
TGGGTTCTTGCCTACCCACCACCCCCAAAGTTTTCAATTACTCTCAACTCAACTCACCTCTTAGAACCCTTCGGTTGGGTGATTGGAAACAAGTGGGATCTTTAC
CTTGATCTTCTGAAGGCCGATTATTCAGAAGGGAGTCAGTATTGGCGTTTAGTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCG
CTCTGTTAA
Protein sequenceShow/hide protein sequence
MERKYRRGQTLIGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVLAYPPPPKFSITLNSTHLLEPFGWVIGNKWDLY
LDLLKADYSEGSQYWRLVKEKIQCMTRVELCLGVPLC