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Chy4G067560 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G067560
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationchrH04:361884..362151
RNA-Seq ExpressionChy4G067560
SyntenyChy4G067560
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60447.1 hypothetical protein Csa_002577 [Cucumis sativus]5.33e-3598.33Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_004148372.3 uncharacterized protein LOC101212897 [Cucumis sativus]3.87e-3598.33Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_016903560.1 PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo]5.67e-3395Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]4.85e-2791.38Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]1.48e-2891.38Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
TrEMBL top hitse value%identityAlignment
A0A0A0LIB2 Uncharacterized protein6.2e-2598.33Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A1S4E6G4 uncharacterized protein LOC1035034904.4e-2395Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A5A7TAA3 Putative membrane lipoprotein4.4e-2395Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A6J1DRK3 uncharacterized protein LOC1110231822.5e-1885Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSS    +S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
A0A6J1I859 uncharacterized protein LOC1114718131.9e-1891.38Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S  DSSS TP
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein4.7e-1770Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS
        M KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG S  DS   TPHS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAATCCTTCACTCTGATTCAGACTATTGCGACTGCCGGAGCCTTCTCTGCCATTTCATTCTGGTATGGTTTTATGTTTGGAAGAGAGTCTGCTCGTAAAGACTT
GGGAGATTTGATTCAAGATCTACGACGAGGAATTTCAAAACCCGATTCTTCTTCTGAAACTCCTCATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAATCCTTCACTCTGATTCAGACTATTGCGACTGCCGGAGCCTTCTCTGCCATTTCATTCTGGTATGGTTTTATGTTTGGAAGAGAGTCTGCTCGTAAAGACTT
GGGAGATTTGATTCAAGATCTACGACGAGGAATTTCAAAACCCGATTCTTCTTCTGAAACTCCTCATTCTTGA
Protein sequenceShow/hide protein sequence
MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS