; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G070280 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G070280
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationchrH04:2755800..2760458
RNA-Seq ExpressionChy4G070280
SyntenyChy4G070280
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]8.64e-17088.93Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQT DSSSAK+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGS+GY T SS +PSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_004136317.1 replication protein A 32 kDa subunit A [Cucumis sativus]3.12e-18898.89Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSASGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DTNQM+EIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_008466326.1 PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]8.23e-18497.05Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM+EIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQTSDSIVKTPVQNGS+GYHTTSSAIPSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]1.28e-17189.67Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGS+GY T SS +PSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_038897330.1 replication protein A 32 kDa subunit A-like [Benincasa hispida]3.44e-17692.99Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFS TQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFV+NGVDITNV IVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM+EIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNL G+G TQ Q+SDSIVKTPVQNGS+G+ T SS IPSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIH+DELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein6.3e-14698.89Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDSASGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DTNQM+EIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like1.5e-14297.05Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM+EIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQNLKG+GSTQLQTSDSIVKTPVQNGS+GYHTTSSAIPSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A4.6e-12084.87Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQ  DS+SAKSRESPGLVPVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM +IQDGMY+RVNGHLK+FQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ L G  STQ Q+SDS V   VQ+GS+GY T SS + S Q
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+ D+LVLDYLQLPSSVAKE+GIH+DELSQQLKIP+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like2.8e-13389.67Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        DT QM EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGS+GY T SS +PSEQ
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.3e-13088.28Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF
        MFSS+QFDS SGFT SQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTF

Query:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTS--SAIPS
        DT QM EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIVKTP+QNGS+GY T S  S +PS
Subjt:  DTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTS--SAIPS

Query:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKK+CD+L+LDYLQLPSSVAKERGIH+DELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C1.0e-2340.62Show/hide
Query:  SASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN
        SA+G  ++     S  +     G VP TV  IS +     +  G     F I+GV+ TNV ++G+V     R+TD+ FT+DD TG I   RW+ D  DT 
Subjt:  SASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN

Query:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRN--SKLQ
            IQ+G+YV+V  +L  FQ+ KQ  A S+RP+ NF+E+  HFIEC+H HL +  SK+Q
Subjt:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRN--SKLQ

Q6H7J5 Replication protein A 32 kDa subunit B1.1e-4135.21Show/hide
Query:  GFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDT
        GF  SQ  +++           KSR +  L+P+TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++FT+DDGTG +   RW ND+ DT
Subjt:  GFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDT

Query:  NQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHT
         +M +IQ+G YV VNG LK FQ  +Q+ A+SVR +TNF+++T HF+ C+H HL  ++ ++ + N +T   T +  +       +    T  ++  S    
Subjt:  NQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHT

Query:  VDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS
             +  +LVL+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  VDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A1.1e-4640.77Show/hide
Query:  FSSTQFDSASGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW
        FS     S S FTSSQ    + ++ +KSR +   +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++FT+DDGTG +   RW
Subjt:  FSSTQFDSASGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW

Query:  VNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------NLKGNGSTQLQTSDSIVKTPVQ
        VND  D+ +   +Q+GMYV V G LK  Q  K+  AF++RPVT+++E+T HFI+C+  HL N+K Q            +   NG +++ T  S+   P  
Subjt:  VNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQ------------NLKGNGSTQLQTSDSIVKTPVQ

Query:  NGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA
                     P    T   K   +  VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  NGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B1.6e-4539.11Show/hide
Query:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN
        +  GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T 
Subjt:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN

Query:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        +M+ ++ GMYVR++GHLK+FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+     +   + + Q   S + TP +    G    S+  P++ 
Subjt:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A2.4e-6548.4Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY
        I CKRWV++TFD  +M+ ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A21.7e-6648.4Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY
        I CKRWV++TFD  +M+ ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A21.7e-6648.4Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY
        I CKRWV++TFD  +M+ ++DG YVR++GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGY

Query:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
          T  +  + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTT--SSAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA321.1e-4639.11Show/hide
Query:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN
        +  GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T 
Subjt:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTN

Query:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ
        +M+ ++ GMYVR++GHLK+FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+     +   + + Q   S + TP +    G    S+  P++ 
Subjt:  QMQEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        +  D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA321.9e-4639.53Show/hide
Query:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLK
        SS ++R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T +M+ ++ GMYVR++GHLK
Subjt:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMQEIQDGMYVRVNGHLK

Query:  MFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQ
        +FQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+     +   + + Q   S + TP +    G    S+  P++ +  D      + VL+YL 
Subjt:  MFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQN---LKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQ

Query:  LPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
         P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  LPSSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCCCCGGGCTTGGTTCCGGTAACTGT
GAAACAGATCAGCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGATATCACATTCACTGTAGACGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAACCAAATGCAGGAAATACAAGAT
GGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAATAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACGAACTTTGATGAAATTACCTTCCACTT
TATTGAATGCATACACGACCACTTGCGGAACTCCAAGTTACAGAATCTCAAAGGCAATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGAAGACTCCAGTGCAGA
ATGGCTCGAATGGATATCATACAACTTCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTACCTGCAGCTGCCC
TCCAGCGTTGCAAAAGAAAGAGGAATACACAAAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCCCCGGGCTTGGTTCCGGTAACTGT
GAAACAGATCAGCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGATATCACATTCACTGTAGACGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAACCAAATGCAGGAAATACAAGAT
GGAATGTACGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAATAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACGAACTTTGATGAAATTACCTTCCACTT
TATTGAATGCATACACGACCACTTGCGGAACTCCAAGTTACAGAATCTCAAAGGCAATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGAAGACTCCAGTGCAGA
ATGGCTCGAATGGATATCATACAACTTCTTCAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTACCTGCAGCTGCCC
TCCAGCGTTGCAAAAGAAAGAGGAATACACAAAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
Protein sequenceShow/hide protein sequence
MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDTFDTNQMQEIQD
GMYVRVNGHLKMFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLKGNGSTQLQTSDSIVKTPVQNGSNGYHTTSSAIPSEQHTVDVKKSCDELVLDYLQLP
SSVAKERGIHKDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA