; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G070320 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G070320
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRibosomal RNA large subunit methyltransferase H
Genome locationchrH04:2782409..2784554
RNA-Seq ExpressionChy4G070320
SyntenyChy4G070320
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003742 - RNA methyltransferase RlmH
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136319.1 putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus]7.97e-11495.48Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLK DDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKELSSE MAELVADAGNTVSSCHHAPIVSGN+FNRAIGSASRLSFCIGGPYGHGQQL+QRANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

XP_008466330.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo]1.03e-9383.05Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQ+DDEDVAVVNLLKSDDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKE+SSEQMAELVADAGNT                     ASRLSFCIGGPYGHGQ+L++RANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

XP_011652513.1 putative RNA methyltransferase At5g10620 isoform X4 [Cucumis sativus]5.11e-9484.75Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLK DDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKELSSE MAELVADAGNT                    SASRLSFCIGGPYGHGQQL+QRANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

XP_031739112.1 putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus]1.21e-11395.48Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLK DDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKELSSE MAELVADAGNTVSSCHHAPIVSGN+FNRAIGSASRLSFCIGGPYGHGQQL+QRANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

XP_031739113.1 putative RNA methyltransferase At5g10620 isoform X3 [Cucumis sativus]7.71e-9484.75Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLK DDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKELSSE MAELVADAGNT                    SASRLSFCIGGPYGHGQQL+QRANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

TrEMBL top hitse value%identityAlignment
A0A0A0LGS0 Uncharacterized protein1.5e-7284.75Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLK DDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKELSSE MAELVADAGNT                    SASRLSFCIGGPYGHGQQL+QRANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

A0A1S3CQZ8 putative RNA methyltransferase At5g106202.6e-7283.05Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQ+DDEDVAVVNLLKSDDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKE+SSEQMAELVADAGNT                     ASRLSFCIGGPYGHGQ+L++RANLSIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

A0A5D3E740 Putative RNA methyltransferase5.5e-6781.98Show/hide
Query:  SVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVS
        ++RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQ+DDEDVAVVNLLKSDDWVVMLDE+GKE+SSEQMAELVADAGNT  
Subjt:  SVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVS

Query:  SCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDYSKRSEVPSLAAAAAQMPA
                           ASRLSFCIGGPYGHGQ+L++RANLSIKLSSMVMDYSKRSEVPSL AAA QMPA
Subjt:  SCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDYSKRSEVPSLAAAAAQMPA

A0A6J1FPF2 putative RNA methyltransferase At5g106201.5e-6777.4Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+VEDVQLRSNPRNARDP+AQVDDED+AVVNLLKSDDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKE+SSEQMAELVADAGNT                     ASRL+FCIGGPYGHGQQL+QRAN+SIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

A0A6J1IWR3 putative RNA methyltransferase At5g106201.6e-6676.84Show/hide
Query:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD
        M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+VEDVQLRSNPRN RD +AQVDDED+AVVNLLKSDDWVVMLD
Subjt:  MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLD

Query:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        E+GKE+SSEQMAELVADAGNT                     ASRLSFCIGGPYGHGQQL+QRAN+SIKLSSMV+++
Subjt:  EHGKELSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

SwissProt top hitse value%identityAlignment
A0M0D0 Ribosomal RNA large subunit methyltransferase H3.0e-0928.1Show/hide
Query:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE-----DVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSS
        I+++ +GK   + ++ L+  Y D+L++Y   E     D++   N     D   Q   E   +++ +++ D+VV+LDE+GK+ SSE  +E +    NT   
Subjt:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVE-----DVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSS

Query:  CHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
                            RL F IGGPYG  +++ +RA+  I LS M   +
Subjt:  CHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

A0PXE8 Ribosomal RNA large subunit methyltransferase H1.9e-0827.63Show/hide
Query:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL--RSNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC
        I ++ VGK + + ++L +DEY  +L  YC +  V+L     P NA  +D       E   ++  +K + +V+ LD +GK  SSE++AEL+ D G      
Subjt:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQL--RSNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC

Query:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
                      +   S ++  IGG  G  +++  RAN  +  S M   +
Subjt:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

B2TRC7 Ribosomal RNA large subunit methyltransferase H4.3e-0828.29Show/hide
Query:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYC--HVEDVQLRSNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC
        I +++VGK + + ++  +DEY  +L  YC  ++ ++Q    P NA  +D     D E   ++N +K + +V+ LD  GK +SSE++++ + + G      
Subjt:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYC--HVEDVQLRSNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC

Query:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
             V GN         S L F IGG  G  + + +R+N S+  S M   +
Subjt:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

B2V1Q9 Ribosomal RNA large subunit methyltransferase H1.1e-0828.95Show/hide
Query:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLR--SNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC
        I +++VGK + + ++  +DEY  +L  YC +  V+L+    P NA  +D     D E   ++N +K + +V+ LD  GK +SSE++++ + + G      
Subjt:  IRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLR--SNPRNA--RDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQMAELVADAGNTVSSC

Query:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
             V GN         S L F IGG  G  + + +R+N S+  S M   +
Subjt:  HHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

Q9LXB4 Putative RNA methyltransferase At5g106201.4e-4656.98Show/hide
Query:  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKE
        SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRNA+D +AQV+DE+VA++ L+ SDDWVV+LDE G++
Subjt:  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKE

Query:  LSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        + SEQMAEL+ DAGN+                     ASR+SFCIGG YGHG Q+++RAN++I+LSSMV+++
Subjt:  LSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY

Arabidopsis top hitse value%identityAlignment
AT5G10620.1 methyltransferases9.7e-4856.98Show/hide
Query:  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKE
        SASP+    G  C+Y GQ+VRA+PIRV+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRNA+D +AQV+DE+VA++ L+ SDDWVV+LDE G++
Subjt:  SASPS----GGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKE

Query:  LSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY
        + SEQMAEL+ DAGN+                     ASR+SFCIGG YGHG Q+++RAN++I+LSSMV+++
Subjt:  LSSEQMAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACTGCTCTCTCCACTGCCCTTTCTGCTTCTCCTTCAGGTGGACGCTGCAAGTACACCGGTCAATCTGTGAGAGCTGTGCCAATACGTGTTTTAACTGTGGGGAA
GAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGTCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGCGGG
ATCCGAAAGCTCAGGTTGATGATGAAGACGTGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTGATGCTGGATGAGCATGGGAAAGAGTTATCCTCCGAGCAG
ATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTTTCCAGTTGTCACCATGCTCCAATTGTTTCTGGAAACGACTTTAATAGAGCTATCGGGAGTGCTTCAAGATTATC
ATTTTGCATTGGTGGACCATATGGTCATGGACAACAACTGCAACAACGAGCTAACTTATCGATCAAGCTTTCCTCCATGGTCATGGACTATTCTAAAAGGTCAGAAGTAC
CATCATTAGCAGCAGCAGCAGCTCAAATGCCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTACTGCTCTCTCCACTGCCCTTTCTGCTTCTCCTTCAGGTGGACGCTGCAAGTACACCGGTCAATCTGTGAGAGCTGTGCCAATACGTGTTTTAACTGTGGGGAA
GAAGAGGTCTCGTGGCGTACAGCTTCTTGTTGATGAGTATATTGATAAGCTCAAGAACTACTGTCATGTTGAAGATGTTCAACTGCGCTCAAATCCGAGGAATGCGCGGG
ATCCGAAAGCTCAGGTTGATGATGAAGACGTGGCTGTCGTGAATCTTCTCAAGTCTGACGACTGGGTTGTGATGCTGGATGAGCATGGGAAAGAGTTATCCTCCGAGCAG
ATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTTTCCAGTTGTCACCATGCTCCAATTGTTTCTGGAAACGACTTTAATAGAGCTATCGGGAGTGCTTCAAGATTATC
ATTTTGCATTGGTGGACCATATGGTCATGGACAACAACTGCAACAACGAGCTAACTTATCGATCAAGCTTTCCTCCATGGTCATGGACTATTCTAAAAGGTCAGAAGTAC
CATCATTAGCAGCAGCAGCAGCTCAAATGCCAGCTTAG
Protein sequenceShow/hide protein sequence
MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVAVVNLLKSDDWVVMLDEHGKELSSEQ
MAELVADAGNTVSSCHHAPIVSGNDFNRAIGSASRLSFCIGGPYGHGQQLQQRANLSIKLSSMVMDYSKRSEVPSLAAAAAQMPA