CuGenDBv2

Gene ID	Chy4G070650
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chrH04:3093307..3095389
RNA-Seq Expression	Chy4G070650
Synteny	Chy4G070650
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

2.62e-149

99.51

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

1.77e-147

98.04

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

4.31e-139

92.65

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

7.15e-138

92.16

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

2.26e-145

97.55

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITNRKFTSSVNKP+IVSM SRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

9.7e-115

99.51

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Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

2.4e-113

98.04

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

2.4e-113

98.04

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLITNRKFTSSVNKP+ VSMNSRFR SAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

5.7e-107

92.65

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLIT RKF  +V+KP IVSMNSRFRASAEVPDFLPADW++AHKK+P+GP LHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

4.8e-106

92.16

Show/hide

Query:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P+GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVW+RGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

4.2e-78

68.18

Show/hide

Query:  LSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRR
        L + PSS+S   N K  +   +   ++ N    +S++VPDFL ADW ++ +K P GPRL F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  R
Subjt:  LSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRR

Query:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        STYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSLFVEENRFKQR+W++G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  STYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCCTTATCCGCGGCTCCTTCATCTATGTCTTTGATTACCAACCGCAAATTCACGAGTTCTGTCAATAAACCTCTGATTGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGACTGGCACGATGCACACAAGAAGGATCCTATAGGTCCAAGACTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCACTGAGATACAATGATCGTCCCCACCAAGATTATGGAATTGAAGTCATGTACCAGTTTGCGGGGTTCGATCCTCTTCGAAGGTCAACATATTTC
GGTCCCTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTATTCCACCATTCAACTTATCGTGTATTGTTAGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGGTACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATG
GGTATTGGCTTACAGAGAGTTTACTAAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDPIGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWVRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Chy4G070650 (gene) of Cucumber (hystrix) v1 genome