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Chy4G071920 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G071920
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchrH04:4447464..4448953
RNA-Seq ExpressionChy4G071920
SyntenyChy4G071920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040717.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]5.36e-0867.57Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QP YPKWYDSN +CDYH RGAEHS+E  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

TYK11073.1 Gag-pro-like protein [Cucumis melo var. makuwa]8.08e-0750.94Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKK
        M P+QPPYPKWYDSN +CDYH  G  HST+  + L R   +L + + G + KK
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKK

TYK16441.1 uncharacterized protein E5676_scaffold21G002390 [Cucumis melo var. makuwa]3.55e-0840.91Show/hide
Query:  PVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKKLVRSRMSTTIHYLIMRIR-K*TL*IALLKSVKMKFMRY*CLWKHFLKGF
        P+QPPYPKWYDSN +CDYH   A HSTE    L R   +L  +  G  S K    R +   + L      K      L++  K +         H LK F
Subjt:  PVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKKLVRSRMSTTIHYLIMRIR-K*TL*IALLKSVKMKFMRY*CLWKHFLKGF

Query:  LKQDM*VRNI
        LKQDM VRNI
Subjt:  LKQDM*VRNI

TYK23633.1 uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa]5.73e-0764.86Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QPPYPKWYDSN +CDYH  G  HSTE  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

XP_031737550.1 uncharacterized protein LOC116402440 [Cucumis sativus]8.16e-0762.16Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        +NP+QPPYPKWYD N +CDYH  G  HSTE  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein2.1e-0564.86Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QPPYPKWYDSN +CDYH  G  HSTE  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

A0A5A7VK41 Reverse transcriptase domain-containing protein2.1e-0564.86Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QPPYPKWYDSN +CDYH  G  HSTE  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

A0A5D3CWZ3 Retrotrans_gag domain-containing protein1.9e-0640.91Show/hide
Query:  PVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKKLVRSRMSTTIHYLIMRIR-K*TL*IALLKSVKMKFMRY*CLWKHFLKGF
        P+QPPYPKWYDSN +CDYH   A HSTE    L R   +  L+  G  S K    R +   + L      K      L++  K +         H LK F
Subjt:  PVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNL*LMLDG*ASKKLVRSRMSTTIHYLIMRIR-K*TL*IALLKSVKMKFMRY*CLWKHFLKGF

Query:  LKQDM*VRNI
        LKQDM VRNI
Subjt:  LKQDM*VRNI

A0A5D3CYV0 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein4.1e-0667.57Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QP YPKWYDSN +CDYH RGAEHS+E  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

A0A5D3DJ57 Retrotrans_gag domain-containing protein1.6e-0564.86Show/hide
Query:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR
        M P+QPPYPKWYDSN +CDYH  G  HSTE  + L R
Subjt:  MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCTGTACAACCTCCTTATCCAAAATGGTATGATTCAAATGATCAATGTGATTATCATGTTAGAGGAGCAGAACACTCAACGGAATATTTTGTTTGGCTTTTAAG
AGGAAGGTGCAATCTTTAATTAATGCTGGATGGTTAAGCTTCAAAAAAGCTGGTGAGAAGCCGAATGTCAACAACAATCCACTACCTAATCATGAGAATTCGAAAGTGAA
CGTTGTAGATTGCCTTGTTGAAAAGTGTAAAAATGAAGTTCATGAGATACTGATGCCTATGGAAGCACTTTTTGAAGGGTTTTTTGAAGCAGGATATGTAAGTCAGGAAT
ATTTAGACCCCAACACATAAGATATGAAGGGTACGATGAAAGCAGACATTGTATATTCCATCAAGAAGTTGCAGGTCATGTTGTCCAATGAAATTTGATCCAAGTCTAAA
ATTTAT
mRNA sequenceShow/hide mRNA sequence
ATGAACCCTGTACAACCTCCTTATCCAAAATGGTATGATTCAAATGATCAATGTGATTATCATGTTAGAGGAGCAGAACACTCAACGGAATATTTTGTTTGGCTTTTAAG
AGGAAGGTGCAATCTTTAATTAATGCTGGATGGTTAAGCTTCAAAAAAGCTGGTGAGAAGCCGAATGTCAACAACAATCCACTACCTAATCATGAGAATTCGAAAGTGAA
CGTTGTAGATTGCCTTGTTGAAAAGTGTAAAAATGAAGTTCATGAGATACTGATGCCTATGGAAGCACTTTTTGAAGGGTTTTTTGAAGCAGGATATGTAAGTCAGGAAT
ATTTAGACCCCAACACATAAGATATGAAGGGTACGATGAAAGCAGACATTGTATATTCCATCAAGAAGTTGCAGGTCATGTTGTCCAATGAAATTTGATCCAAGTCTAAA
ATTTAT
Protein sequenceShow/hide protein sequence
MNPVQPPYPKWYDSNDQCDYHVRGAEHSTEYFVWLLRGRCNLLMLDG*ASKKLVRSRMSTTIHYLIMRIRKTL*IALLKSVKMKFMRY*CLWKHFLKGFLKQDM*VRNI*
TPTHKI*RVRKQTLYIPSRSCRSCCPMKFDPSLKFX