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Chy4G074110 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G074110
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationchrH04:8325513..8326455
RNA-Seq ExpressionChy4G074110
SyntenyChy4G074110
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]3.97e-3666.67Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV
        KRK G KHYE ++VIS+A E  NDQLKTI++WPKEKRA ++EL  E  KQLQDIP+L+S+DR KLMQI+F  V+ IEGFLS P +LKLEYC +LLE+NV
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.61e-3365.98Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED
        KRK G KHYE ++VI +A+E  NDQLK I+NWPKEKRA ++EL  E  KQLQDIPELQSRDR KL+QI+F  V+ IEGFLS P E KLEYC +LL++
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]2.56e-3262.89Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED
        KRK G +HYE ++VI +AM+  NDQLK I++W KEKRA+ +EL     KQLQDIP+LQ+RDR K++QI+FH V+ IEGFLS P ELKLEYC VLLE+
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]1.34e-3667.01Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED
        KRK G +HYE ++VI +AME  NDQLKTI+NWPKEKR  ++EL  E  KQLQ+I EL SRDR KLMQI+FH V+ IEGFLS PIELKLEYC +LL++
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]1.56e-4678.57Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDN
        KRK GG+HYE +DVISN MEVRNDQLK I+NW KEKRA ++EL VE  KQLQDI EL++RDRVKLMQIIFH VDDIEGFLSCP +LKLEYC+VLLEDN
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDN

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein1.9e-3678.79Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV
        KRK GG+HYE +DVISN MEVRNDQLK I+NW KEKRA ++EL VE  KQLQDI EL++RDRVKLMQIIFH VDDIEGFLSCP +LKLEYC+VLLEDNV
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV

A0A5A7SQU2 Putative nuclease HARBI12.4e-2865.98Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED
        KRK G KHYE ++VI +A+E  NDQLK I+NWPKEKRA ++EL  E  KQLQDIPELQSRDR KL+QI+F  V+ IEGFLS P E KLEYC +LL++
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED

A0A5A7V8C5 Putative nuclease HARBI11.3e-2667.03Show/hide
Query:  YEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV
        Y   + I + ME  NDQLK I+NWPKEKRA ++ELCVE  KQLQDIPELQS+DR KLMQI+F  V+ IEGFLS P+ELKLEYC +LL++NV
Subjt:  YEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV

A0A5D3BZU3 Retrotransposon protein2.9e-2966.67Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV
        KRK G KHYE ++VIS+A E  NDQLKTI++WPKEKRA ++EL  E  KQLQDIP+L+S+DR KLMQI+F  V+ IEGFLS P +LKLEYC +LLE+NV
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV

A0A5D3CT52 Retrotransposon protein1.9e-2867.01Show/hide
Query:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED
        KRK G +HYE ++VI +AME  NDQLKTI+NWPKEKR  ++EL  E  KQLQ+I EL SRDR KLMQI+FH V+ IEGFLS PIELKLEYC +LL++
Subjt:  KRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRAIDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCTTCAAGAGCACCAAAACACACATAGATTAAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGATGGTGATC
GGATAATGGGACATTTCGACCTGGGTACTTGGCCCAATTACAACGGATGATGGCAAAGAAGTTGCCCGACACTAGTATCAAGGATTGTCATGTGAAATCCTTTAA
AAAAACCTACCAAGCAATTGCAAAAATGAGGGGACCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAACGACAGTTGTTTGATAG
TTGGGTCAAGAGTCATCCTGCAGCCAAAGGCCTTCTACATAAATCATTTTCATGTTATGCTAAACGTTTAGAGACCTTTGCTGATGTCTGATCTAATGTGCATGA
TCAAGACATCCCGACGATGTATAGCCAAGGACTGCATATGTCACCAGTTGAGATGATAGGAACACGTGAAGGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGG
AAGAGAAAATGGGGTGGCAAACATTATGAGGAGATAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAAGACAATTTCAAATTGGCCGAAAGAA
AAGCGTGCAATAGACATCGAATTATGTGTTGAAGGTGGGAAACAGTTGCAAGATATCCCTGAACTACAGAGCCGAGACAGGGTAAAGCTTATGCAAATCATATTC
CATAGGGTGGATGACATAGAGGGATTCTTGTCGTGTCCAATAGAACTTAAATTGGAGTATTGCAAGGTTCTCTTGGAAGATAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCTTCAAGAGCACCAAAACACACATAGATTAAAAGAGGAAGAAGCAAAACTGGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGTGGATGGTGATC
GGATAATGGGACATTTCGACCTGGGTACTTGGCCCAATTACAACGGATGATGGCAAAGAAGTTGCCCGACACTAGTATCAAGGATTGTCATGTGAAATCCTTTAA
AAAAACCTACCAAGCAATTGCAAAAATGAGGGGACCATCGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAACGACAGTTGTTTGATAG
TTGGGTCAAGAGTCATCCTGCAGCCAAAGGCCTTCTACATAAATCATTTTCATGTTATGCTAAACGTTTAGAGACCTTTGCTGATGTCTGATCTAATGTGCATGA
TCAAGACATCCCGACGATGTATAGCCAAGGACTGCATATGTCACCAGTTGAGATGATAGGAACACGTGAAGGTCGATCAGGTGAAGGAAGAAATTGTTCAAGTGG
AAGAGAAAATGGGGTGGCAAACATTATGAGGAGATAGATGTGATCAGTAATGCAATGGAAGTTAGAAATGATCAATTAAAGACAATTTCAAATTGGCCGAAAGAA
AAGCGTGCAATAGACATCGAATTATGTGTTGAAGGTGGGAAACAGTTGCAAGATATCCCTGAACTACAGAGCCGAGACAGGGTAAAGCTTATGCAAATCATATTC
CATAGGGTGGATGACATAGAGGGATTCTTGTCGTGTCCAATAGAACTTAAATTGGAGTATTGCAAGGTTCTCTTGGAAGATAATGTTTGA
Protein sequenceShow/hide protein sequence
MASSSRAPKHTIKRGRSKTG*VLGGIGFIWWMVIG*WDISTWVLGPITTDDGKEVARH*YQGLSCEILKNLPSNCKNEGTIV*WLWMERRISMHHCRTTVV**LG
QESSCSQRPST*IIFMLCTFRDLC*CLI*CA*SRHPDDV*PRTAYVTS*DDRNT*RSIR*RKKLFKWKRKWGGKHYEEIDVISNAMEVRNDQLKTISNWPKEKRA
IDIELCVEGGKQLQDIPELQSRDRVKLMQIIFHRVDDIEGFLSCPIELKLEYCKVLLEDNV