CuGenDBv2

Gene ID	Chy4G076130
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Lipid-A-disaccharide synthase
Genome location	chrH04:12185666..12200195
RNA-Seq Expression	Chy4G076130
Synteny	Chy4G076130
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606331.1 hypothetical protein SDJN03_03648, partial [Cucurbita argyrosperma subsp. sororia]

6.32e-96

83.05

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHN PSIS HPL RHRN T   HSQ LPLNSLKL++QSFL+N  I KLRTRGS SFP+VYAAQNNFLRVFQT WK+GKDGIEAGTDLVP SVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
        P+ARISV I AL+IGLFL KSVLSTA FVLAM+GAIYFIFIALNKDEGPRGGGGS+SS  STEETLEEAR+IMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

XP_004152015.1 uncharacterized protein LOC101207451 isoform X1 [Cucumis sativus]

8.28e-117

98.31

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHNFPSISGHPLTRHRNPT SLHSQILPLNSLKLKEQSFLFNP IEKLRTRGSPSFPLVYAAQNNFLRVFQT WKIGKDGIEAGTDLVPDSVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
        PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

XP_008447333.1 PREDICTED: uncharacterized protein LOC103489804 [Cucumis melo]

6.49e-102

89.94

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHNFPSIS HPLTRHRNPT SLHSQ LPLNSLKLK+QS      IEKLR RGSPSFPLVYAAQNNFLRVFQT WKIGKDGIEAGTDLVP SVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSP--TSTEETLEEARRIMEKYK
        PIARISVGIVAL IGLFLFKS+LSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSS   TSTEETLEEARRIMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSP--TSTEETLEEARRIMEKYK

XP_022931135.1 uncharacterized protein LOC111437405 [Cucurbita moschata]

8.97e-96

82.49

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHN PSIS HPL RHRNPT   HSQ LPLNSLKL++Q FL+N  I KLRTRGS SFP+VYAAQNNFLRVFQT WK+GKDGIEAGT+LVP SVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
        P+ARISV I AL+IGLFL KSVLSTA FVLAM+GAIYFIFIALNKDEGPRGGGGS+SS  STEETLEEAR+IMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

XP_038887965.1 uncharacterized protein LOC120077928 [Benincasa hispida]

4.00e-104

89.39

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHNFPSIS HPLTRHRN   SLHSQ LP NSLKLK+QSFL NP I KLRTRGSPSF LVYAAQNNFLRVFQT WK+GKDGIEAGTDL+PDSVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSS--PTSTEETLEEARRIMEKYK
        PIARISVG+VALTIGLFLFKS+LSTALFVLAMMGAIYFIFIALNKDEGPRG GGSSSS  PTSTEETLEEARRIMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSS--PTSTEETLEEARRIMEKYK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA2 Uncharacterized protein

4.4e-63

96.21

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHNFPSISGHPLTRHRNPT SLHSQILPLNSLKLKEQSFLFNP IEKLRTRGSPSFPLVYAAQNNFLRVFQT WKIGKDGIEAGTDLVPDSVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAM
        PIARISVGIVALTIGLFLFKSVLSTALFVL +
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAM

A0A1S3BHT2 uncharacterized protein LOC103489804

1.3e-78

89.94

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHNFPSIS HPLTRHRNPT SLHSQ LPLNSLKLK+QS      IEKLR RGSPSFPLVYAAQNNFLRVFQT WKIGKDGIEAGTDLVP SVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGG--SSSSPTSTEETLEEARRIMEKYK
        PIARISVGIVAL IGLFLFKS+LSTALFVLAMMGAIYFIFIALNKDEGPRGGGG  SSSS TSTEETLEEARRIMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGG--SSSSPTSTEETLEEARRIMEKYK

A0A6J1DZ75 uncharacterized protein LOC111025970

9.8e-71

83.71

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASS LFHNF SIS HP  RHRNP    HSQ LP NSLKLK+QS   N  I KL  RGSPSFPLVYAAQNNFLRVFQT WKIGKDGIEAGT LVPDSVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGS-SSSPTSTEETLEEARRIMEKYK
        PIARISV IVA TI LFL KSVLSTALFVLAMMGAIYF+FIALNKDEGPRGGGGS SSS TSTEETLEEARRIMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGS-SSSPTSTEETLEEARRIMEKYK

A0A6J1ESP6 uncharacterized protein LOC111437405

5.5e-74

82.49

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHN PSIS HPL RHRNPT   HSQ LPLNSLKL++Q FL+N  I KLRTRGS SFP+VYAAQNNFLRVFQT WK+GKDGIEAGT+LVP SVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
        P+ARISV I AL+IGLFL KSVLSTA FVLAM+GAIYFIFIALNKDEGPRGGGGS+SS  STEETLEEAR+IMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

A0A6J1K1P0 uncharacterized protein LOC111491610

1.0e-72

81.92

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Query:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR
        MASSCLFHN PSIS HPL RHRN T   HSQ LPLNSLKL++QSFL+   I KLR R S SFP+VYAAQNNFLRVFQT WK+GKDGIEAGTDLVPDSVPR
Subjt:  MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPR

Query:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK
        P+ARISV I AL+IGLFL KSVLSTA FVLAM+GAIYFIFIALNKDEGPRGGGGS+SS  STEETLEEAR+IMEKYK
Subjt:  PIARISVGIVALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G13220.1 unknown protein

5.0e-35

56.58

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Query:  PLNSLKLKEQSFLFNPPIEKLRTRGSPSFP-------LVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPRPIARISVGIVALTIGLFLFKSVLSTA
        P + LKLK  S L       LRTR +P  P       LV +AQ++FL+V +TAW IGKDGIEAGT+LVP SVPRP+ARISV I AL + LF+ KS LSTA
Subjt:  PLNSLKLKEQSFLFNPPIEKLRTRGSPSFP-------LVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPRPIARISVGIVALTIGLFLFKSVLSTA

Query:  LFVLAMMGAIYFIFIALNKDEGPR-GGGGSSSSPTSTEETLEEARRIMEKYK
         FVL  MG  YF+FIALNKDE P+  G  +SS   S ++ LEEA++IM+KYK
Subjt:  LFVLAMMGAIYFIFIALNKDEGPR-GGGGSSSSPTSTEETLEEARRIMEKYK

Sequences

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CDS sequence

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ATGGCTTCTTCATGTCTATTTCACAACTTCCCTTCAATTTCAGGACACCCGTTAACACGTCATAGAAATCCAACTAAATCCCTCCATTCCCAGATCCTCCCTTTGAATTC
CTTAAAACTCAAAGAACAATCTTTCCTCTTTAATCCACCAATTGAAAAGCTAAGAACTCGTGGTTCTCCTTCTTTCCCTCTTGTATATGCCGCTCAGAACAATTTCTTGA
GAGTCTTTCAGACAGCTTGGAAGATTGGGAAGGATGGAATTGAGGCAGGAACAGACCTAGTACCTGACTCTGTACCAAGACCAATTGCAAGGATATCTGTTGGAATAGTT
GCATTAACAATTGGACTCTTTTTATTCAAGTCGGTTTTGTCTACAGCCTTATTTGTGCTGGCTATGATGGGAGCAATTTATTTCATATTTATAGCGTTGAATAAAGATGA
AGGGCCAAGAGGAGGTGGAGGCTCTTCCTCCTCCCCAACCTCTACAGAAGAAACTCTTGAAGAAGCCAGAAGAATAATGGAGAAGTACAAGTAG

mRNA sequence

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Protein sequence

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MASSCLFHNFPSISGHPLTRHRNPTKSLHSQILPLNSLKLKEQSFLFNPPIEKLRTRGSPSFPLVYAAQNNFLRVFQTAWKIGKDGIEAGTDLVPDSVPRPIARISVGIV
ALTIGLFLFKSVLSTALFVLAMMGAIYFIFIALNKDEGPRGGGGSSSSPTSTEETLEEARRIMEKYK

Chy4G076130 (gene) of Cucumber (hystrix) v1 genome