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Chy4G076590 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G076590
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGirdin-like
Genome locationchrH04:13544732..13548486
RNA-Seq ExpressionChy4G076590
SyntenyChy4G076590
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR027413 - GroEL-like equatorial domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044912.1 girdin-like [Cucumis melo var. makuwa]1.82e-8274.85Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQ+SDFSYD EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW  +    I L+E    LE E+
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED

TYK16558.1 girdin-like [Cucumis melo var. makuwa]5.57e-8474.85Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQ+SDFSYD EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW  +    I L+E    LE E+
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED

TYK23955.1 girdin-like [Cucumis melo var. makuwa]2.04e-8174.85Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNY PLLVL QVWLKQFIPPTHNLQ+SDFSYDLEDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW  +    I L+E    LE E+
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED

XP_031739496.1 uncharacterized protein LOC116403043 [Cucumis sativus]6.02e-9180.84Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        KK+TWVSFFSTLSSE+VIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQDSDF+YD EDCQ KKHRAVCA KSVRKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED
        KDK HYEGVTSGY AW TNRRKNVIY+L++VVERVEE SSE P+QW  ++     L+E    LE E+
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED

XP_031740432.1 uncharacterized protein LOC116403430 [Cucumis sativus]1.80e-9182.04Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        KK+TWVSFFSTLSSE+VIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQDSDF+YD EDCQ KKHRAVCA KSVRKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED
        KDK HYEGVTSGY AW TNRRKNVIY+LREVVERVEE SSE P+QW  ++     L+E    LE E+
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQWSLQVL*LIILQESAG*LEVED

TrEMBL top hitse value%identityAlignment
A0A5A7T5S7 Girdin-like1.8e-6580.82Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQ+SDFSYD EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW
        KDK HYEGVTSGY AW  NRRKN+I   REVVE  +E S E PNQW
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW

A0A5A7TNJ1 Girdin-like3.6e-6681.51Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQ+SDFSYD EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW

A0A5A7UL51 Girdin-like3.5e-6176.71Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKA IYRC DFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPT NLQ+SDFSY+ EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW
        KDK H EGVTSGY AW  N+RKN+I   REVVER +E S   PNQW
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW

A0A5D3CZ50 Girdin-like3.6e-6681.51Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVL QVWLKQFIPPTHNLQ+SDFSYD EDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW

A0A5D3DK34 Girdin-like2.7e-6681.51Show/hide
Query:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI
        +K+ W+SFF+ L+SENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNY PLLVL QVWLKQFIPPTHNLQ+SDFSYDLEDCQGKK +AVCA KS+RKI
Subjt:  KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCA*KSVRKI

Query:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW
        KDK HYEGVTSGY AW  NRRKN+I   REVVER +E S E PNQW
Subjt:  KDK*HYEGVTSGYGAW*TNRRKNVIYSLREVVERVEEKSSE*PNQW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAAGAAGACTTGGGTATCTTTCTTTTCAACATTGAGTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCA
TAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAAGTGTGGCTCAAACAGTTTATACCACCAACTCATAATTTACAAGACT
CTGACTTTTCATATGATCTTGAAGACTGCCAAGGGAAAAAACATCGAGCAGTATGTGCATGAAAGTCTGTGAGGAAGATAAAAGACAAATGACACTATGAAGGAGTTACC
AGTGGATATGGGGCATGGTAGACAAACAGAAGGAAGAATGTAATATATAGTTTAAGGGAGGTAGTTGAAAGGGTAGAAGAGAAGAGCTCTGAATAACCGAACCAGTGGTC
ATTACAGGTTCTTTAGTTGATAATATTACAGGAATCAGCAGGATAACTCGAAGTGGAAGATGTTATAAACCAGATAATTTAACAGCTCCGTCAAGTAGTTTGACATTGGG
GAAAGGGAGAAAAAATGAGAAAAGAAATGTGAATGAACATGACAGAGCAGGATATAGAGATGCCTATCGTAGCAAAAGATATAGAATGCAAAAAACCTGTTACGGATGAG
GAAGCAAACAAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGACCAAATGCATCATACTCCAGCTCAAATTTTATTATCTTTGTTTTTGAATTCA
mRNA sequenceShow/hide mRNA sequence
AAGAAGAAGACTTGGGTATCTTTCTTTTCAACATTGAGTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCA
TAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAAGTGTGGCTCAAACAGTTTATACCACCAACTCATAATTTACAAGACT
CTGACTTTTCATATGATCTTGAAGACTGCCAAGGGAAAAAACATCGAGCAGTATGTGCATGAAAGTCTGTGAGGAAGATAAAAGACAAATGACACTATGAAGGAGTTACC
AGTGGATATGGGGCATGGTAGACAAACAGAAGGAAGAATGTAATATATAGTTTAAGGGAGGTAGTTGAAAGGGTAGAAGAGAAGAGCTCTGAATAACCGAACCAGTGGTC
ATTACAGGTTCTTTAGTTGATAATATTACAGGAATCAGCAGGATAACTCGAAGTGGAAGATGTTATAAACCAGATAATTTAACAGCTCCGTCAAGTAGTTTGACATTGGG
GAAAGGGAGAAAAAATGAGAAAAGAAATGTGAATGAACATGACAGAGCAGGATATAGAGATGCCTATCGTAGCAAAAGATATAGAATGCAAAAAACCTGTTACGGATGAG
GAAGCAAACAAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGACCAAATGCATCATACTCCAGCTCAAATTTTATTATCTTTGTTTTTGAATTCA
Protein sequenceShow/hide protein sequence
KKKTWVSFFSTLSSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLHQVWLKQFIPPTHNLQDSDFSYDLEDCQGKKHRAVCAKSVRKIKDK*HYEGVTS
GYGAW*TNRRKNVIYSLREVVERVEEKSSEPNQWSLQVL*LIILQESAG*LEVEDVINQII*QLRQVVHWGKGEKMRKEM*MNMTEQDIEMPIVAKDIECKKPVTDEEAN
KFLKIVKQSEYKIIDQMHHTPAQILLSLFLNS