; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G077900 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G077900
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationchrH04:16062890..16063404
RNA-Seq ExpressionChy4G077900
SyntenyChy4G077900
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]5.76e-3359.46Show/hide
Query:  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKL
        RS+E     S SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V+QL  I ELS  DRV  M+I+MCNV+DMK+FL+I DELKL
Subjt:  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKL

Query:  DYYTVMLEDNA
        DY T++ +DNA
Subjt:  DYYTVMLEDNA

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-3262.5Show/hide
Query:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK
        G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELK
Subjt:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK

Query:  LDYYTVMLEDNA
        LDY T MLEDNA
Subjt:  LDYYTVMLEDNA

KGN58436.1 hypothetical protein Csa_000900 [Cucumis sativus]1.82e-3465.09Show/hide
Query:  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTV
        MNA S SK K+ GQTAET+KIIRN M+Y ND  +AIVEWP+VQ Q + A  AE +KQL  I ELST DR  LM  +MCNV+DMK+  EI +ELKLDY TV
Subjt:  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTV

Query:  MLEDNA
        MLEDNA
Subjt:  MLEDNA

TYK07171.1 retrotransposon protein [Cucumis melo var. makuwa]1.79e-3262.5Show/hide
Query:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK
        G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELK
Subjt:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK

Query:  LDYYTVMLEDNA
        LDY T MLEDNA
Subjt:  LDYYTVMLEDNA

TYK18628.1 retrotransposon protein [Cucumis melo var. makuwa]1.56e-2842.07Show/hide
Query:  VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPN
        VFGKDRATG     L   G+  L GT    LT+  IR S           + + R SE     S SK K+KGQ A++  I+R A+EY N+ L  I +W  
Subjt:  VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPN

Query:  VQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN
        +Q Q+   +  E V+QL  I EL+  DR  LMRI+M NV+DMK+FLE+PD +K  Y +++L++N
Subjt:  VQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN

TrEMBL top hitse value%identityAlignment
A0A0A0LEB9 Uncharacterized protein4.9e-2665.09Show/hide
Query:  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTV
        MNA S SK K+ GQTAET+KIIRN M+Y ND  +AIVEWP+VQ Q + A  AE +KQL  I ELST DR  LM  +MCNV+DMK+  EI +ELKLDY TV
Subjt:  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTV

Query:  MLEDNA
        MLEDNA
Subjt:  MLEDNA

A0A5A7V469 Retrotransposon protein1.9e-2559.46Show/hide
Query:  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKL
        RS+E     S SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V+QL  I ELS  DRV  M+I+MCNV+DMK+FL+I DELKL
Subjt:  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKL

Query:  DYYTVMLEDNA
        DY T++ +DNA
Subjt:  DYYTVMLEDNA

A0A5A7VIQ2 Retrotransposon protein5.4e-2562.5Show/hide
Query:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK
        G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELK
Subjt:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK

Query:  LDYYTVMLEDNA
        LDY T MLEDNA
Subjt:  LDYYTVMLEDNA

A0A5D3C5I7 Retrotransposon protein5.4e-2562.5Show/hide
Query:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK
        G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELK
Subjt:  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELK

Query:  LDYYTVMLEDNA
        LDY T MLEDNA
Subjt:  LDYYTVMLEDNA

A0A5D3D513 Retrotransposon protein6.6e-2342.07Show/hide
Query:  VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPN
        VFGKDRATG     L   G+  L GT    LT+  IR S           + + R SE     S SK K+KGQ A++  I+R A+EY N+ L  I +W  
Subjt:  VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPN

Query:  VQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN
        +Q Q+   +  E V+QL  I EL+  DR  LMRI+M NV+DMK+FLE+PD +K  Y +++L++N
Subjt:  VQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTTTGGGAAAGATCGTGCTACGGGACACGTGTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATG
ATTCGGAGATCCCTATGATCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATT
CGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAG
TTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAG
CTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA
mRNA sequenceShow/hide mRNA sequence
GTGTTTGGGAAAGATCGTGCTACGGGACACGTGTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATG
ATTCGGAGATCCCTATGATCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATT
CGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAG
TTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAG
CTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA
Protein sequenceShow/hide protein sequence
VFGKDRATGHVSHLSMWGRMCL*GTKKFPLTMEMIRRSL*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL
GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA