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Chy4G078530 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G078530
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
Genome locationchrH04:17510191..17523674
RNA-Seq ExpressionChy4G078530
SyntenyChy4G078530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042975.1 retrotransposon protein [Cucumis melo var. makuwa]2.08e-3450Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTNV-DVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S   +      + CH +        T V DVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTNV-DVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V+N CTDQR RWF++
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

KAA0046365.1 retrotransposon protein [Cucumis melo var. makuwa]2.47e-3449.7Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  +    R S  T+ +     + CH +        T V DVEEM  
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV

Query:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        MFL+ILAH+VKNRVIQREFM S  T+S HFNMVLLA+IRLH ELLKKPQ V N C DQR RWFE+
Subjt:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]9.71e-3550.3Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV
        MDEHE AS++N FI SQ+QLLL+      +    T   Y T      +     +  ++   R S  T+ +     + CH +        T V DVEEM  
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV

Query:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        MFL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V N CTDQR RWFE+
Subjt:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

KAA0065893.1 retrotransposon protein [Cucumis melo var. makuwa]5.38e-3551.52Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S  T+ +     + CH +        T V DVEEM  
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGP-KMFCHFVPPT*DHCLTNV-DVEEMAV

Query:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        MFLYILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V N CTDQR RWFE+
Subjt:  MFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

TYK11110.1 retrotransposon protein [Cucumis melo var. makuwa]1.95e-3550.61Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTNV-DVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S   +      + CH +       LT V DVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTNV-DVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V+N CTDQR RWF++
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

TrEMBL top hitse value%identityAlignment
A0A5A7TNJ0 Retrotransposon protein2.5e-2850Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S   +      + CH +        T  VDVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V+N CTDQR RWF++
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

A0A5A7TXW1 Retrotransposon protein4.3e-2850.61Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S          + CH +        T  VDVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V N CTDQR RWFE+
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

A0A5A7VCK9 Retrotransposon protein8.6e-2951.22Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S          + CH +        T  VDVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FLYILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V N CTDQR RWFE+
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

A0A5D3BDX0 Retrotransposon protein3.3e-2850.61Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S          + CH +        T  VDVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V N CTDQR RWFE+
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

A0A5D3CIC5 Retrotransposon protein3.9e-2950.61Show/hide
Query:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM
        MDEHE AS++N FI SQRQLLL+      +    T   Y T      +     +  ++   R S   +      + CH +       LT  VDVEEM  M
Subjt:  MDEHEFASLLNVFITSQRQLLLI-----QNCYITT*RGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPT*DHCLTN-VDVEEMAVM

Query:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH
        FL+ILAH+VKNRVIQREFM S  TIS HFNMVLLA+IRLH ELLKKPQ V+N CTDQR RWF++
Subjt:  FLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQR*RWFEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.2e-0541.67Show/hide
Query:  VDVEEMAVMFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRL
        + +E    +FL+I+ HN++ R +Q  F +S  TIS HFN VL A+I +
Subjt:  VDVEEMAVMFLYILAHNVKNRVIQREFMWSDGTISYHFNMVLLAIIRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAACATGAGTTTGCATCTCTACTAAATGTGTTCATAACATCCCAACGTCAGTTGCTACTTATTCAAAATTGTTACATAACAACATAAAGAGGATATTGCACATC
CTCCATGACACTAGGCATAGGATTAGAAATTTGCCTATTTTCGAATGAATCATGCGTCAGACCTAGTGTGTCGACAAAGTACGAGAATGGACCGAAGATGTTTTGCCATT
TTGTGCCACCTACTTAGGACCATTGCTTGACTAACGTCGATGTTGAGGAGATGGCCGTAATGTTCCTCTATATACTTGCACACAACGTGAAAAATCGTGTCATTCAACGA
GAGTTCATGTGGTCGGATGGGACAATTTCCTATCATTTCAACATGGTGTTGTTGGCAATTATTCGACTGCATGTCGAGCTCTTGAAAAAACCACAACTAGTGACTAACAG
TTGTACAGATCAAAGATAGAGGTGGTTTGAGCATTTGGTAAAAGAAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAACATGAGTTTGCATCTCTACTAAATGTGTTCATAACATCCCAACGTCAGTTGCTACTTATTCAAAATTGTTACATAACAACATAAAGAGGATATTGCACATC
CTCCATGACACTAGGCATAGGATTAGAAATTTGCCTATTTTCGAATGAATCATGCGTCAGACCTAGTGTGTCGACAAAGTACGAGAATGGACCGAAGATGTTTTGCCATT
TTGTGCCACCTACTTAGGACCATTGCTTGACTAACGTCGATGTTGAGGAGATGGCCGTAATGTTCCTCTATATACTTGCACACAACGTGAAAAATCGTGTCATTCAACGA
GAGTTCATGTGGTCGGATGGGACAATTTCCTATCATTTCAACATGGTGTTGTTGGCAATTATTCGACTGCATGTCGAGCTCTTGAAAAAACCACAACTAGTGACTAACAG
TTGTACAGATCAAAGATAGAGGTGGTTTGAGCATTTGGTAAAAGAAAAAATAA
Protein sequenceShow/hide protein sequence
MDEHEFASLLNVFITSQRQLLLIQNCYITTRGYCTSSMTLGIGLEICLFSNESCVRPSVSTKYENGPKMFCHFVPPTDHCLTNVDVEEMAVMFLYILAHNVKNRVIQREF
MWSDGTISYHFNMVLLAIIRLHVELLKKPQLVTNSCTDQRRWFEHLVKEKIX