; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G078560 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G078560
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic
Genome locationchrH04:17536257..17537373
RNA-Seq ExpressionChy4G078560
SyntenyChy4G078560
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.25e-9697.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]3.77e-9798.61Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]9.24e-9899.31Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.18e-9697.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_038902740.1 photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]2.55e-9597.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQS  PKN+KAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein7.7e-7499.31Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic2.2e-7398.61Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI2.2e-7398.61Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like8.5e-7397.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like8.5e-7397.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic1.5e-5375.35Show/hide
Query:  LATLAAVQPVTVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQPV VKGL GSS++G KL +RPS R   R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPVTVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic4.2e-6181.38Show/hide
Query:  MASLATLAAVQPVT-VKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP + VKGLGGSSL GAKL ++PSRQSF+PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPVT-VKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic5.0e-6279.86Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP T+KGL GSS+AG KL ++P+RQSF+  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic4.2e-6181.38Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic1.6e-6079.31Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H23.0e-6281.38Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-11.1e-6179.31Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTTCCTCTCAGACCGTCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTTCCTCTCAGACCGTCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCTACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI