; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Chy4G079260 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G079260
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L44
Genome locationchrH04:18539004..18546215
RNA-Seq ExpressionChy4G079260
SyntenyChy4G079260
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1206304.1 60S ribosomal protein L44 [Morella rubra]4.25e-6999.05Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

OMO65938.1 Ribosomal protein L44e [Corchorus olitorius]1.53e-69100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

PHT62729.1 60S ribosomal protein L44 [Capsicum annuum]1.76e-6999.06Show/hide
Query:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

PIN00418.1 60S ribosomal protein L44 [Handroanthus impetiginosus]2.75e-69100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_017635996.1 PREDICTED: 60S ribosomal protein L44-like [Gossypium arboreum]1.69e-69100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

TrEMBL top hitse value%identityAlignment
A0A0B0PY50 60S ribosomal L441.7e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A1R3H6E5 Ribosomal protein L44e1.7e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A2G2XZ44 60S ribosomal protein L441.3e-5399.06Show/hide
Query:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
        KEVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG
Subjt:  KEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKG

Query:  KGTSLF
        KGTSLF
Subjt:  KGTSLF

A0A2G9G523 60S ribosomal protein L441.7e-53100Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A6A1V215 60S ribosomal protein L443.8e-5399.05Show/hide
Query:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  EVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a5.3e-5293.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

O59870 60S ribosomal protein L443.8e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ50 60S ribosomal protein L446.5e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

P0CQ51 60S ribosomal protein L446.5e-4277.67Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

Q96499 60S ribosomal protein L441.3e-55100Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein3.8e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein3.8e-5393.27Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein1.7e-4592.39Show/hide
Query:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Subjt:  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGATTGCTCGCTTACGTGGACCTTGACATCGAAACCTGCGATTTAGTCGCTTTGGATGTCACCTCTCTCATCGGTGAAGTCTTGGCCGCCGGAAACTTGGAGGTTAAGTT
CCGCATCGTGGCATTGATCGATGACGTCCAAATGATGTGGAGGGAGGAGACAGGGGAAAGTGGGGGCGGTGTTGTGGCAGAGGAGGAGATGGCTCCGATGGGGAGAAGGG
CGGGGATTGAGAGGTTGATGATGGAGAAATTTGATGGGTTTGAAAATGGAAGAGAGTTGGGAGATTGTTGTGTTTGTTACGAAGAAGTCAAGGAAGGAGAGAAGGAGGTG
AACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGG
AAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAG
GTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
CGATTGCTCGCTTACGTGGACCTTGACATCGAAACCTGCGATTTAGTCGCTTTGGATGTCACCTCTCTCATCGGTGAAGTCTTGGCCGCCGGAAACTTGGAGGTTAAGTT
CCGCATCGTGGCATTGATCGATGACGTCCAAATGATGTGGAGGGAGGAGACAGGGGAAAGTGGGGGCGGTGTTGTGGCAGAGGAGGAGATGGCTCCGATGGGGAGAAGGG
CGGGGATTGAGAGGTTGATGATGGAGAAATTTGATGGGTTTGAAAATGGAAGAGAGTTGGGAGATTGTTGTGTTTGTTACGAAGAAGTCAAGGAAGGAGAGAAGGAGGTG
AACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGG
AAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAG
GTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG
Protein sequenceShow/hide protein sequence
RLLAYVDLDIETCDLVALDVTSLIGEVLAAGNLEVKFRIVALIDDVQMMWREETGESGGGVVAEEEMAPMGRRAGIERLMMEKFDGFENGRELGDCCVCYEEVKEGEKEV
NVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF