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Chy4G080300 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G080300
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionhomeobox-leucine zipper protein HOX11-like
Genome locationchrH04:19636570..19638791
RNA-Seq ExpressionChy4G080300
SyntenyChy4G080300
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR003106 - Leucine zipper, homeobox-associated


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606860.1 Homeobox-leucine zipper protein HOX11, partial [Cucurbita argyrosperma subsp. sororia]1.25e-1481.25Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA
        K CC TLTQQN KL+KELQDLRALKTT SLF++SP TTLT+CASCERA
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA

XP_004149612.1 homeobox-leucine zipper protein HOX27 isoform X1 [Cucumis sativus]1.31e-5950.78Show/hide
Query:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEI-----------------------
        MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT      V  E+                       
Subjt:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEI-----------------------

Query:  -----KIAEAKARSCKKVES------------SSSSSRSLVSKQTS------------------------------------------------------
             +  E K +S  ++E             SS   +  +S+Q S                                                      
Subjt:  -----KIAEAKARSCKKVES------------SSSSSRSLVSKQTS------------------------------------------------------

Query:  -KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
         KKCCATLTQQNTKLQKELQDL+ALKTTHSLFINSPPTTLTLCASCERAVATP+SR
Subjt:  -KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR

XP_008461760.1 PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo]1.22e-5450.2Show/hide
Query:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEIKIAEAKA--------RSCKKV--
        MELDLRLGNDPSPSSHPTPL FSLSF S++LQHQA NHIHQNHLLLHSLNSPPPP+A ASRPSSPT      V  E+ I+EA A        RS K +  
Subjt:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEIKIAEAKA--------RSCKKV--

Query:  ------------------------------------------------ESSSSSSRSLVSKQTS------------------------------------
                                                        E S     +L  KQ                                      
Subjt:  ------------------------------------------------ESSSSSSRSLVSKQTS------------------------------------

Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
        KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR

XP_031737758.1 homeobox-leucine zipper protein HOX27 isoform X2 [Cucumis sativus]2.59e-37100Show/hide
Query:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT
        MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT
Subjt:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT

XP_038905671.1 homeobox-leucine zipper protein HOX11-like [Benincasa hispida]4.99e-3143.14Show/hide
Query:  MELDLRLGND------PSPSSHPTPLRFSLSFPSIDLQ----HQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT-------VIDEI------------
        MEL LRLGND      PS SSHPTPL FSLSF SI LQ    HQ HNH HQNHLL  SLNS PPP+A  SR SS T       V  E+            
Subjt:  MELDLRLGND------PSPSSHPTPLRFSLSFPSIDLQ----HQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT-------VIDEI------------

Query:  -------------------------KIAEAKARSCKKVESSSSSSRSLVS----------------------------------------KQTSKKC---
                                 +  E    S KK+  +   S  L                                          KQT  +C   
Subjt:  -------------------------KIAEAKARSCKKVESSSSSSRSLVS----------------------------------------KQTSKKC---

Query:  ---CATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
           CATLTQQNTKLQKELQDLRALKTTHSLF++SP TTLTLCASCERA ATP SR
Subjt:  ---CATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR

TrEMBL top hitse value%identityAlignment
A0A0A0LEY4 Homeobox domain-containing protein3.9e-4750.78Show/hide
Query:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEI-----------------------
        MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT      V  E+                       
Subjt:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEI-----------------------

Query:  -----KIAEAKARSCKKVES------------SSSSSRSLVSKQTS------------------------------------------------------
             +  E K +S  ++E             SS   +  +S+Q S                                                      
Subjt:  -----KIAEAKARSCKKVES------------SSSSSRSLVSKQTS------------------------------------------------------

Query:  -KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
         KKCCATLTQQNTKLQKELQDL+ALKTTHSLFINSPPTTLTLCASCERAVATP+SR
Subjt:  -KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR

A0A1S3CFB9 homeobox-leucine zipper protein HOX11-like3.4e-4350.2Show/hide
Query:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEIKIAEAKA--------RSCKKV--
        MELDLRLGNDPSPSSHPTPL FSLSF S++LQHQA NHIHQNHLLLHSLNSPPPP+A ASRPSSPT      V  E+ I+EA A        RS K +  
Subjt:  MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPT------VIDEIKIAEAKA--------RSCKKV--

Query:  ------------------------------------------------ESSSSSSRSLVSKQT------------------------------------S
                                                        E S     +L  KQ                                      
Subjt:  ------------------------------------------------ESSSSSSRSLVSKQT------------------------------------S

Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
        KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR

A0A6J1GBE1 homeobox-leucine zipper protein HOX11-like2.0e-1181.25Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA
        K CC TLTQQN KL+KELQDLRALKTT SLF++SP TTLT+CASCERA
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA

A0A6J1KEH0 homeobox-leucine zipper protein HOX11-like4.5e-1179.17Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA
        K CC TLTQ+N KL+KELQDLRALKTT SLF++SP TTLT+CASCERA
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERA

A0A7J0FNT8 Homeobox leucine zipper protein7.1e-0964.71Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVAT
        KKCC TLTQ+NT+LQKELQ+LRALKT+   ++  P TTLT+C SCER  +T
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVAT

SwissProt top hitse value%identityAlignment
A2YW03 Homeobox-leucine zipper protein HOX271.2e-0851.92Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATP
        K+CC TLT++N +L KEL +LRALKT    +++ P TTL++C SCER  + P
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATP

A2Z1U1 Homeobox-leucine zipper protein HOX111.8e-0956Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVA
        K+CC TLT++N +LQKEL +LRALKT H  +++ P TTL++C SCER  +
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVA

Q01I23 Homeobox-leucine zipper protein HOX172.0e-0860.38Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALK-TTHSLFIN-SPPTTLTLCASCERAVAT
        K+CC TLT++N +LQKE+Q+LRALK  +  L++N SPPTTLT+C SCER   T
Subjt:  KKCCATLTQQNTKLQKELQDLRALK-TTHSLFIN-SPPTTLTLCASCERAVAT

Q67UE2 Homeobox-leucine zipper protein HOX111.8e-0956Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVA
        K+CC TLT++N +LQKEL +LRALKT H  +++ P TTL++C SCER  +
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVA

Q6YPD0 Homeobox-leucine zipper protein HOX271.2e-0851.92Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATP
        K+CC TLT++N +L KEL +LRALKT    +++ P TTL++C SCER  + P
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATP

Arabidopsis top hitse value%identityAlignment
AT2G22800.1 Homeobox-leucine zipper protein family2.7e-0853.19Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCER
        KKCC TL  +N +LQKE+Q+L+ LK T   +++ P +TLT C SCER
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCER

AT2G44910.1 homeobox-leucine zipper protein 41.2e-0856.25Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFIN-SPPTTLTLCASCER
        K+CC  LT++N +LQKE+ +LRALK +  L+++ +PPTTLT+C SCER
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFIN-SPPTTLTLCASCER

AT4G16780.1 homeobox protein 24.6e-0849.06Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFIN-SPPTTLTLCASCERAVATP
        ++CC  LT++N +LQKE+ +LRALK +   +++ SPPTTLT+C SCE     P
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFIN-SPPTTLTLCASCERAVATP

AT4G37790.1 Homeobox-leucine zipper protein family7.8e-0836.45Show/hide
Query:  QNHLLLHSLNSPPPPSAPASRPSSPTVIDEIKIAEAKARSCKKVESSSSSSRSLVSKQTSKKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLT
        +++  LHS  +P    A A + +      E+     +AR+  K        ++ V  +  KKCC TLT +N +LQKELQDL+ALK +   +++ P  TLT
Subjt:  QNHLLLHSLNSPPPPSAPASRPSSPTVIDEIKIAEAKARSCKKVESSSSSSRSLVSKQTSKKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLT

Query:  LCASCER
        +C SCER
Subjt:  LCASCER

AT5G06710.1 homeobox from Arabidopsis thaliana7.1e-0954.9Show/hide
Query:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVAT
        K+CC +LT++N +LQKE+++LR LKT+   ++  P TTLT+C SCER VAT
Subjt:  KKCCATLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGGATTTGAGATTAGGAAATGATCCTTCTCCTTCTTCACATCCAACACCCCTTCGTTTTTCCCTTTCTTTTCCCTCCATTGATCTTCAACATCAAGCT
CACAATCACATTCACCAAAACCACCTCCTTCTCCACTCTCTTAATTCTCCTCCACCACCCTCCGCCCCAGCCTCTCGCCCATCTTCTCCAACCGTAATTGATGAG
ATTAAAATTGCAGAAGCAAAAGCTAGAAGTTGCAAGAAGGTTGAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGACGAGCAAGAAATGTTGTGCC
ACACTTACTCAACAAAACACGAAGCTTCAAAAGGAACTTCAGGATTTGAGAGCTCTAAAAACTACTCATTCTTTGTTCATCAACTCTCCCCCTACCACTCTCACC
TTGTGCGCCTCTTGCGAACGCGCTGTCGCAACCCCAATCTCCCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTGGATTTGAGATTAGGAAATGATCCTTCTCCTTCTTCACATCCAACACCCCTTCGTTTTTCCCTTTCTTTTCCCTCCATTGATCTTCAACATCAAGCT
CACAATCACATTCACCAAAACCACCTCCTTCTCCACTCTCTTAATTCTCCTCCACCACCCTCCGCCCCAGCCTCTCGCCCATCTTCTCCAACCGTAATTGATGAG
ATTAAAATTGCAGAAGCAAAAGCTAGAAGTTGCAAGAAGGTTGAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGACGAGCAAGAAATGTTGTGCC
ACACTTACTCAACAAAACACGAAGCTTCAAAAGGAACTTCAGGATTTGAGAGCTCTAAAAACTACTCATTCTTTGTTCATCAACTCTCCCCCTACCACTCTCACC
TTGTGCGCCTCTTGCGAACGCGCTGTCGCAACCCCAATCTCCCGCTGA
Protein sequenceShow/hide protein sequence
MELDLRLGNDPSPSSHPTPLRFSLSFPSIDLQHQAHNHIHQNHLLLHSLNSPPPPSAPASRPSSPTVIDEIKIAEAKARSCKKVESSSSSSRSLVSKQTSKKCCA
TLTQQNTKLQKELQDLRALKTTHSLFINSPPTTLTLCASCERAVATPISR