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Chy4G080330 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G080330
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTranscription termination factor like
Genome locationchrH04:19730103..19730562
RNA-Seq ExpressionChy4G080330
SyntenyChy4G080330
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]1.27e-3778.02Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDD
        M  I + DV  +F++IAMFVF+Q+LVYLILSKSSNLFSND+K+RSLSFKPARSVSIRR LAALSDLPPGGELSPS+ V TPSS RR+RSDD
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDD

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]9.36e-4077.66Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR
        M  I + DV  +F++IAMFVF+Q+LVYLILSKSSNLFSND+K+RSLSFKPARSVSIRR LAALSDLPPGGELSPS+ V TPSS RR+RSDD GR
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]9.26e-4184.78Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG
        MTPI +TD GEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELSPS       S RR RSDDG
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]2.17e-5498.94Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR
        MTPIFDTD GEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]8.76e-4582.98Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR
        MTPI ++D  EMFV+IAMF F+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGE+SP+ +V TPSS RRD SDDGGR
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR

TrEMBL top hitse value%identityAlignment
A0A0A0LD48 Uncharacterized protein1.2e-1894.64Show/hide
Query:  NDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR
        N  KVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSAR DRSDDGGR
Subjt:  NDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR

A0A1S3CFW1 uncharacterized protein LOC1035002811.4e-3084.78Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG
        MTPI +TD GEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELS       PSS RR RSDDG
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG

A0A5A7UC63 Uncharacterized protein1.4e-3084.78Show/hide
Query:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG
        MTPI +TD GEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFLAALSDLPPGGELS       PSS RR RSDDG
Subjt:  MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDG

A0A6J0PQA3 uncharacterized protein LOC1095065091.6e-1565Show/hide
Query:  EMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSD
        ++ +++AMFV +Q LVYLILSKSSN+FS   K RSLSF+  RSVSIRR LAALSDLPPGGE SPS+ VS  SS   D  D
Subjt:  EMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSD

B9REM2 Uncharacterized protein9.5e-1667.57Show/hide
Query:  IFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTK
        I ++ +G+M +++AMF  +Q LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL DLP  GELSPS K
Subjt:  IFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein3.7e-1256.92Show/hide
Query:  MFVRIAMFVFIQLLVYLILSKSSNLFSNDQKV-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS
        M +++++F  IQ LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GGE+SPS
Subjt:  MFVRIAMFVFIQLLVYLILSKSSNLFSNDQKV-RSLSFKPARSVSIRRFLAALSDLPPGGELSPS

AT2G31945.1 unknown protein1.5e-1350.63Show/hide
Query:  DTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKV-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSS
        D  +G M +++A+F  +Q LVYLIL KSS +F+    + R+ SF+P RSVSIRR LAAL D+P G ++SPS+  S+ SS
Subjt:  DTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKV-RSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCGATTTTCGATACCGATGTCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTT
CTCCAACGACCAGAAGGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCGGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTC
CGTCGACGAAAGTTTCCACTCCGTCGTCGGCTCGTCGCGATCGTTCCGATGACGGTGGCAGAGGGGTTGGTTTTGTGAATTCTGATTATTTGTATTTATTATTTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGCCGATTTTCGATACCGATGTCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTATTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAATCTCTT
CTCCAACGACCAGAAGGTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCGGCTCTTTCTGACCTTCCTCCCGGTGGTGAGCTTTCTC
CGTCGACGAAAGTTTCCACTCCGTCGTCGGCTCGTCGCGATCGTTCCGATGACGGTGGCAGAGGGGTTGGTTTTGTGAATTCTGATTATTTGTATTTATTATTTGAATGA
Protein sequenceShow/hide protein sequence
MTPIFDTDVGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFLAALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRGVGFVNSDYLYLLFE