CuGenDBv2

Gene ID	Chy4G080720
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transmembrane protein 41B
Genome location	chrH04:20176521..20184622
RNA-Seq Expression	Chy4G080720
Synteny	Chy4G080720
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR032816 - SNARE associated Golgi protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037692.1 transmembrane protein 41B [Cucumis melo var. makuwa]

2.76e-88

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ GSSS DEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK

TYK10681.1 transmembrane protein 41B [Cucumis melo var. makuwa]

4.42e-90

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ GSSS DEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK

XP_004141157.1 uncharacterized protein LOC101209858 [Cucumis sativus]

1.16e-90

98.58

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLKVAGSSS DEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK

XP_008465163.1 PREDICTED: uncharacterized protein LOC103502831 [Cucumis melo]

7.74e-89

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ GSSS DEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAGSSS-DEGNDNVDPSKTKEFK

XP_038903022.1 uncharacterized protein LOC120089724 [Benincasa hispida]

1.66e-85

93.57

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFP+LGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSSDEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+A SSS  GNDNVDPSK K  K
Subjt:  GSSILISWRIKKYSSGLKVAGSSSDEGNDNVDPSKTKEFK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFP4 Uncharacterized protein

4.5e-69

98.58

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLKVAG SSSDEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK

A0A1S3CN62 uncharacterized protein LOC103502831

1.1e-67

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ G SSSDEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK

A0A5A7T2J8 Transmembrane protein 41B

1.1e-67

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ G SSSDEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK

A0A5D3CFV9 Transmembrane protein 41B

1.1e-67

96.45

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGS KSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+ G SSSDEGNDNVDPSKTKEFK
Subjt:  GSSILISWRIKKYSSGLKVAG-SSSDEGNDNVDPSKTKEFK

A0A6J1DDR9 uncharacterized protein LOC111020123

2.8e-63

91.49

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Query:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
        MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKV FFLDFLLPTVIGC+PMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI
Subjt:  MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGI

Query:  GSSILISWRIKKYSSGLKVAGSSSD-EGNDNVDPSKTKEFK
        GSSILISWRIKKYSSGLK+A SSS  EG+D+VD SKT++ K
Subjt:  GSSILISWRIKKYSSGLKVAGSSSD-EGNDNVDPSKTKEFK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G03260.1 SNARE associated Golgi protein family

3.8e-04

24.82

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Query:  FHLLSRGVEQDGWKFVLLARFSPI-PSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGSSILI--
        F  +S  +++ G+K VLL R  PI P  ++NY L+ T V    +++L T +G MP+      +G+          G  +  ++ ++  ++G+  ++++  
Subjt:  FHLLSRGVEQDGWKFVLLARFSPI-PSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGSSILI--

Query:  -SWRIKKYSSGLKVAGSSSD-EGNDNVDPSKTKEFKSPLDL
           R+ K S    +A + ++ +G  N D S     + P DL
Subjt:  -SWRIKKYSSGLKVAGSSSD-EGNDNVDPSKTKEFKSPLDL

AT1G44960.1 SNARE associated Golgi protein family

1.0e-49

70.9

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Query:  WAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGS
        WA  NKYF++LSRGVE+DGWKFVLLARFSPIPSYVINYALAAT+V F  DFL PTVIGC+PMILQN S+GSLAG AVAS +G QKSQ+W Y+FPVLGI S
Subjt:  WAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGS

Query:  SILISWRIKKYSSGLKVAGSSSDEGNDNVDPSKT
        S+LIS RIKKYS+G+  A S +   N ++  S+T
Subjt:  SILISWRIKKYSSGLKVAGSSSDEGNDNVDPSKT

Sequences

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CDS sequence

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ATGGAGTGGGCACAGAGGAATAAATATTTCCACCTTCTTTCTAGAGGAGTAGAGCAAGATGGTTGGAAATTTGTCCTTCTTGCTCGCTTTTCACCTATTCCCTCATACGT
TATAAATTATGCTCTTGCTGCAACCAAAGTTGAGTTCTTTCTTGATTTTCTACTGCCAACTGTAATTGGATGCATGCCGATGATACTTCAGAACACGTCGATTGGCAGTC
TTGCTGGTGCTGCAGTTGCTTCAGCATCGGGATCTCAGAAATCTCAGATATGGTCATACATTTTTCCTGTACTTGGTATCGGATCAAGCATTCTAATTTCGTGGAGGATT
AAAAAGTACTCTAGTGGACTCAAAGTGGCGGGAAGTTCTAGTGATGAAGGGAATGACAATGTTGACCCATCCAAAACCAAGGAGTTTAAGAGTCCACTGGATTTAGATAT
TTAA

mRNA sequence

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Protein sequence

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MEWAQRNKYFHLLSRGVEQDGWKFVLLARFSPIPSYVINYALAATKVEFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASGSQKSQIWSYIFPVLGIGSSILISWRI
KKYSSGLKVAGSSSDEGNDNVDPSKTKEFKSPLDLDI

Chy4G080720 (gene) of Cucumber (hystrix) v1 genome