CuGenDBv2

Gene ID	Chy4G086380
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	SRP54 domain-containing protein
Genome location	chrH04:25184137..25184559
RNA-Seq Expression	Chy4G086380
Synteny	Chy4G086380
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442853.1 PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo]

3.77e-54

97.92

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Query:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKR  AEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Subjt:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

XP_011652018.1 uncharacterized protein LOC105434975 [Cucumis sativus]

1.87e-54

96.88

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Query:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        MGSQGRDGEGFPAVDVERELNPGDNKHVEVDP+SSQVATSLEAKEHEKRK AE+ERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Subjt:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

XP_022144747.1 uncharacterized protein LOC111014362 [Momordica charantia]

2.10e-34

76.4

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Query:  GEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        G  FPA DV+RELNPG N+HVEVDP+SS+VA SLE KE  KRK  EEERK AKK  + M+TLKTTFIVSG+IAAVAVAAFAIVKKLREN
Subjt:  GEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

XP_022947065.1 uncharacterized protein LOC111451047 [Cucurbita moschata]

5.08e-33

69.23

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Query:  MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKK
        M S GRDG         FPAVDV+REL+PG N+HV VDPISSQVA S+E KE  KRK T EEERK+AKKK + MQTLKTTFIVSG++AAVAVAAF +VKK
Subjt:  MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKK

Query:  LREN
        LR+N
Subjt:  LREN

XP_023005785.1 uncharacterized protein LOC111498680 [Cucurbita maxima]

3.58e-33

70.19

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Query:  MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKK
        M S GRDG         FPAVDV+REL+PG N+HV VDPISSQVA S+E KE  KRK T EEERK+AKKK + MQTLKTTFIVSG+IAAVAVAAF +VKK
Subjt:  MGSQGRDGEG-------FPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKK

Query:  LREN
        LR+N
Subjt:  LREN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBF7 Uncharacterized protein

1.4e-39

96.88

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Query:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        MGSQGRDGEGFPAVDVERELNPGDNKHVEVDP+SSQVATSLEAKEHEKRK AE+ERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Subjt:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

A0A1S3B6R1 uncharacterized protein LOC103486621

2.4e-39

97.92

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Query:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKR  AEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
Subjt:  MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

A0A6J1CUK2 uncharacterized protein LOC111014362

2.2e-24

76.4

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Query:  GEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        G  FPA DV+RELNPG N+HVEVDP+SS+VA SLE KE  KRK  EEERK A KK + M+TLKTTFIVSG+IAAVAVAAFAIVKKLREN
Subjt:  GEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

A0A6J1G5S8 uncharacterized protein LOC111451047

1.9e-23

71.88

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Query:  GSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        G+ G  G  FPAVDV+REL+PG N+HV VDPISSQVA S+E KE  KRK T EEERK+A KKK+ MQTLKTTFIVSG++AAVAVAAF +VKKLR+N
Subjt:  GSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

A0A6J1KYC8 uncharacterized protein LOC111498680

1.4e-23

72.92

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Query:  GSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        G+ G  G  FPAVDV+REL+PG N+HV VDPISSQVA S+E KE  KRK T EEERK+A KKK+ MQTLKTTFIVSG+IAAVAVAAF +VKKLR+N
Subjt:  GSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRK-TAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52620.1 unknown protein

1.2e-14

52.22

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Query:  DGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN
        D   FP  D E ELNPG NK+ EVDP+SS++A+       EK +   E+R+ AK K++  +TLK T IVS +I AVA AAFAI KKL+EN
Subjt:  DGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

Sequences

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CDS sequence

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ATGGGAAGCCAAGGAAGAGATGGGGAAGGGTTTCCAGCTGTGGACGTGGAGAGAGAACTAAATCCAGGAGATAACAAGCACGTTGAAGTCGATCCAATTTCCTCTCAAGT
TGCTACATCTTTGGAAGCTAAGGAACATGAGAAGAGAAAAACAGCGGAAGAAGAGCGGAAGAGAGCGAAGAAGAAGAAGGAAGCAATGCAGACGTTGAAGACAACGTTCA
TCGTCTCTGGCATCATCGCTGCCGTAGCGGTGGCAGCCTTTGCCATTGTTAAGAAATTGCGTGAAAACTAA

mRNA sequence

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Protein sequence

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MGSQGRDGEGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRKTAEEERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN

Chy4G086380 (gene) of Cucumber (hystrix) v1 genome