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Chy4G086810 (gene) of Cucumber (hystrix) v1 genome

Gene IDChy4G086810
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTRASH domain-containing protein
Genome locationchrH04:25549508..25549915
RNA-Seq ExpressionChy4G086810
SyntenyChy4G086810
Gene Ontology termsGO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2994624.1 probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea]1.24e-0675.68Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

KAA0043915.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa]3.51e-09100Show/hide
Query:  FERKRNRPERYDRNFAEEPLKAIKKID
        FERKRNRPERYDRNFAEEPLKAIKKID
Subjt:  FERKRNRPERYDRNFAEEPLKAIKKID

KAE8651076.1 hypothetical protein Csa_002111 [Cucumis sativus]1.41e-3572.92Show/hide
Query:  MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKESKGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE
        MEKDVT     +FERKRNRPERYDRNFAEEPLKAIKKID             T +AWKESKGA RGSEGGSFPHPSKDQSQGGT+ K+SK+SPMEE
Subjt:  MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKESKGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE

XP_020576413.1 LOW QUALITY PROTEIN: probable ribosome biogenesis protein RLP24 [Phalaenopsis equestris]1.42e-0675.68Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

XP_022858257.1 probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris]1.26e-0675.68Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

TrEMBL top hitse value%identityAlignment
A0A067KE36 TRASH domain-containing protein4.3e-0472.97Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

A0A0A0LDW1 Uncharacterized protein1.0e-2672.92Show/hide
Query:  MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKESKGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE
        MEKDVT     +FERKRNRPERYDRNFAEEPLKAIKKID             T +AWKESKGA RGSEGGSFPHPSKDQSQGGT+ K+SK+SPMEE
Subjt:  MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKESKGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE

A0A5A7TR87 Putative ribosome biogenesis protein RLP241.3e-0596.43Show/hide
Query:  KFERKRNRPERYDRNFAEEPLKAIKKID
        +FERKRNRPERYDRNFAEEPLKAIKKID
Subjt:  KFERKRNRPERYDRNFAEEPLKAIKKID

A0A6A2XUQ6 Putative ribosome bioproteinsis protein RLP244.3e-0472.97Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

A0A7G7YBB0 Putative 60S ribosomal protein L244.3e-0472.97Show/hide
Query:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID
        KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Subjt:  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP241.8e-0464.86Show/hide
Query:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI
        M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Subjt:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein1.3e-0564.86Show/hide
Query:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI
        M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Subjt:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI

AT2G44860.2 Ribosomal protein L24e family protein1.3e-0564.86Show/hide
Query:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI
        M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Subjt:  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGGATGTGACAGGGGTAAACATGAAATTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCTGAAGAGCCATTGAAGGCTATAAAG
AAGATTGATATATAAAGTCATAGCGGTTAGGGAATCATGACACATTTCACGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCAGAAGGAGGATCG
TTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCGATCACAAGAAGAGCAAAGTCAGCCCTATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGGATGTGACAGGGGTAAACATGAAATTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCTGAAGAGCCATTGAAGGCTATAAAG
AAGATTGATATATAAAGTCATAGCGGTTAGGGAATCATGACACATTTCACGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCAGAAGGAGGATCG
TTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCGATCACAAGAAGAGCAAAGTCAGCCCTATGGAAGAATGA
Protein sequenceShow/hide protein sequence
MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKIDISHSG*GIMTHFTENAWKESKGARGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE*